RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 SFTPA1Q8IWL2 248 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 LINC00469Q8N7U9 141 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 PMEPA1Q969W9 287 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 OR7C2O60412 319 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 VAMP3Q15836 100 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 OR5AS1Q8N127 324 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 ANKRD34AQ69YU3 496 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 RND1Q92730 232 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 IGHV2-5P01817 119 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 PAX1P15863 534 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 SRSF6Q13247 344 aaKnown RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF124Q15973 351 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 IL36BQ9NZH7 164 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CA6P23280 308 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CX3CL1P78423 397 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 TRIM61Q5EBN2 209 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 LINC00312Q9Y6C7 94 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 H7C1H1 209 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CTAG1AP78358 180 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 DTX1Q86Y01 620 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 SAP25Q8TEE9 199 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 SMIM14Q96QK8 99 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 TIMP4Q99727 224 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 DUSP13Q9UII6 198 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 PLAC9Q5JTB6 97 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 EMC6Q9BV81 110 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 IL9P15248 144 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 SRSF1Q07955 248 aaKnown RBP eCLIP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CHCHD2Q9Y6H1 151 aaPredicted RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 ATAD5Q96QE3 1844 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 C16orf54Q6UWD8 224 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 NHSQ6T4R5 1651 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 A8MWP6 167 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 AMTP48728 403 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM123Q8N131 208 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 NDUFB4O95168 129 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 AKR1C3P42330 323 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 GPR61Q9BZJ8 451 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CLDN16Q9Y5I7 305 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 KLK13Q9UKR3 277 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 PXMP4Q9Y6I8 212 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 DDX60LQ5H9U9 1706 aaKnown RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 THAP3Q8WTV1 239 aaPredicted RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 NXT2Q9NPJ8 142 aaKnown RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 KLF7O75840 302 aaPredicted RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 URGCP-MRPS24S4R325 110 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 MBNL2Q5VZF2 373 aaKnown RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 HBBP68871 147 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 DMRTC2Q8IXT2 367 aaPredicted RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 CHTOPQ9Y3Y2 248 aaKnown RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 OR4C46A6NHA9 309 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 ZNF32P17041 273 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 TMEM251Q8N6I4 163 aa4.22□□□□□ -1.73
PCDH9-201ENST00000377861 WIPF2Q8TF74 440 aaPredicted RBP4.22□□□□□ -1.73
PCDH9-201ENST00000377861 A6NL46 340 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 ARL3P36405 182 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 RELL2Q8NC24 303 aaPredicted RBP4.21□□□□□ -1.73
PCDH9-201ENST00000377861 A0A0G2JLM5 398 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 IGKV1D-16P01601 117 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 TIMP3P35625 211 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 CIARTQ8N365 385 aaPredicted RBP4.21□□□□□ -1.73
PCDH9-201ENST00000377861 MYO5AQ9Y4I1 1855 aaKnown RBP4.21□□□□□ -1.73
PCDH9-201ENST00000377861 CREBBPQ92793 2442 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 WBP1Q96G27 269 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 SMIM3Q9BZL3 60 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 PAQR4Q8N4S7 273 aaPredicted RBP4.21□□□□□ -1.73
PCDH9-201ENST00000377861 NECAP1Q8NC96 275 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 LINC00574Q9H8X3 128 aa4.21□□□□□ -1.73
PCDH9-201ENST00000377861 SELLP14151 372 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 SRP19P09132 144 aaKnown RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 OR3A4PP47883 348 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CIRBPQ14011 172 aaKnown RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 MS4A7Q9GZW8 240 aaPredicted RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 PRDM13Q9H4Q3 707 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 IGF2-ASQ6U949 168 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 TP53RKQ96S44 253 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CXCL13O43927 109 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CYTL1Q9NRR1 136 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 IGHV5-10-1A0A0J9YXX1 117 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CT62P0C5K7 136 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 GATA4P43694 442 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 RNF115Q9Y4L5 304 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 NDUFS8O00217 210 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 FAM180AQ6UWF9 173 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 NUDT8Q8WV74 236 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 RD3LP0DJH9 198 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 KIR2DL2P43627 348 aaPredicted RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CR1LQ2VPA4 569 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 DCAF12L2Q5VW00 463 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 PTCRAQ6ISU1 281 aaPredicted RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 TSKUQ8WUA8 353 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 TRAV9-2A0A087WT02 112 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 CA1P00915 261 aaPredicted RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 THOC3Q96J01 351 aaKnown RBP4.21□□□□□ -1.74
PCDH9-201ENST00000377861 GYPAP02724 150 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 WDR83OSQ9Y284 106 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 NKX2-6A6NCS4 301 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 PROB1E7EW31 1015 aa4.21□□□□□ -1.74
PCDH9-201ENST00000377861 ID1P41134 155 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms