RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 NEUROG1Q92886 237 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 SSC5DA1L4H1 1573 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 FAM71F2Q6NXP2 309 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM160Q9NX00 188 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 APOBEC3AP31941 199 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 RPL34P49207 117 aaKnown RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 EFNB1P98172 346 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 BSXQ3C1V8 233 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 LYRM7Q5U5X0 104 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 PRR33A8MZF0 331 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 CST2P09228 141 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 ATP6V0CP27449 155 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 CYB5R2Q6BCY4 276 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 GSX1Q9H4S2 264 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 YTHDF2Q9Y5A9 579 aaKnown RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 PINLYPA6NC86 204 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 RRHO14718 337 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 BCL2L11O43521 198 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 HINT1P49773 126 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 DLX6P56179 175 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 ST6GALNAC6Q969X2 333 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 CLEC7AQ9BXN2 247 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 RBKSQ9H477 322 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 J3QT63 122 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 KIR3DL2P43630 455 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 LHFPL5Q8TAF8 219 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 KCNK7Q9Y2U2 307 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 TRAV12-3A0A0B4J271 114 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 INHBBP09529 407 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 FOXA3P55318 350 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-202ENST00000357409 UBE2V2Q15819 145 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 PHYHIPQ92561 330 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 SH3BGRL3Q9H299 93 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MDC1Q14676 2089 aaKnown RBP6.28□□□□□ -1.4
VPS13A-202ENST00000357409 CD74P04233 296 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 STARD6P59095 220 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 CD69Q07108 199 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 CLLU1Q5K131 121 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 SLC35E3Q7Z769 313 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 DOLPP1Q86YN1 238 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 TCHHQ07283 1943 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 NPFFO15130 113 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 IGHV1-2P23083 117 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 UBE2DNLQ8IWF7 75 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 PMCHL2Q9BQD1 86 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 TRAV1-2A0A0B4J238 106 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 ARRDC5A6NEK1 342 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 NPPCP23582 126 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MMP16P51512 607 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 LAMTOR1Q6IAA8 161 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 BIVMQ86UB2 503 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 IGLV3-16A0A075B6K0 115 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 SUMO2P61956 95 aaKnown RBP6.28□□□□□ -1.4
VPS13A-202ENST00000357409 NDPQ00604 133 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 GOLT1AQ6ZVE7 132 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MRAP2Q96G30 205 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 PDE4DIPQ5VU43 2346 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 RICTORQ6R327 1708 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MYOM1P52179 1685 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 IFITM10A6NMD0 228 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 PRR30Q53SZ7 412 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-202ENST00000357409 LURAP1LQ8IV03 231 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MTFP1Q9UDX5 166 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 OR2W1Q9Y3N9 320 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 RBFOX2O43251 390 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS13A-202ENST00000357409 SELLP14151 372 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 C19orf24Q9BVV8 132 aa6.28□□□□□ -1.4
VPS13A-202ENST00000357409 MPTX1A8MV57 137 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 LINC01387J3KSC0 135 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 GCGP01275 180 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 FBLN7Q53RD9 439 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 NPVFQ9HCQ7 196 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 MOB4Q9Y3A3 225 aa6.27□□□□□ -1.4
VPS13A-202ENST00000357409 A0A1B0GUH1 482 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 DIRC3C9JPN6 131 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 HIST1H1BP16401 226 aaKnown RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 MEOX2P50222 304 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 FAM159AQ6UWV7 190 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 TMEM91Q6ZNR0 172 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 RNASEH2CQ8TDP1 164 aaKnown RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 MIXL1Q9H2W2 232 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 PGA4P0DJD7 388 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 PGA3P0DJD8 388 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 MFAP4P55083 255 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 HMGN3Q15651 99 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 ZNRD1Q9P1U0 126 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 RBFOX3A6NFN3 312 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 SPAG17Q6Q759 2223 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 TCRBV4S1A1TA0A5B7 111 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 NDUFB6O95139 128 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 IL4P05112 153 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 TMEM170BQ5T4T1 132 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 NUDT11Q96G61 164 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 TMEM106BQ9NUM4 274 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 N4BP2Q86UW6 1770 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 SP5Q6BEB4 398 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-202ENST00000357409 HIST2H2BDQ6DRA6 164 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 FGFBP3Q8TAT2 258 aa6.27□□□□□ -1.41
VPS13A-202ENST00000357409 METRNQ9UJH8 293 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms