RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ACTBP60709 375 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 TMEM95Q3KNT9 176 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 HOGA1Q86XE5 327 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 CLVS1Q8IUQ0 354 aaPredicted RBP11.12□□□□□ -0.63
LIMS1-201ENST00000332345 H1FOOQ8IZA3 346 aaPredicted RBP11.12□□□□□ -0.63
LIMS1-201ENST00000332345 Q8N9W7 124 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 BEST4Q8NFU0 473 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 OR5AU1Q8NGC0 362 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 OR5AN1Q8NGI8 311 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 RAB2BQ8WUD1 216 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 BCL7BQ9BQE9 202 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 SCOCQ9UIL1 159 aa11.12□□□□□ -0.63
LIMS1-201ENST00000332345 H7C2Y5 167 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 PROP1O75360 226 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 FBXO24O75426 580 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 IGHG2P01859 326 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 PRSS3P35030 304 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 SOX6P35712 828 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 TAS2R20P59543 309 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 MMDQ15546 238 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 SLC35E3Q7Z769 313 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 FOXRED2Q8IWF2 684 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 C11orf44Q8N8P7 122 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 CHPT1Q8WUD6 406 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 RNF5Q99942 180 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 OR2D2Q9H210 308 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 KIAA1456Q9P272 454 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 WASHC3Q9Y3C0 194 aa11.11□□□□□ -0.63
LIMS1-201ENST00000332345 H0YJW9 148 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 M0R1X1 148 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 KCNAB3O43448 404 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 NOL3O60936 208 aaKnown RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 RBBP9O75884 186 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 SLC22A5O76082 557 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 APOA2P02652 100 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 EIF4EP06730 217 aaKnown RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 CD28P10747 220 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 LUMP51884 338 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 TAGLNQ01995 201 aaKnown RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 C2orf68Q2NKX9 166 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 FAM131AQ6UXB0 335 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 GLDNQ6ZMI3 551 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 FAM71E2Q8N5Q1 922 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 GVQW1Q8N7I0 195 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 DRAXINQ8NBI3 349 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 NPBQ8NG41 125 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 WIPF2Q8TF74 440 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 IFT46Q9NQC8 304 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 SDHAF2Q9NX18 166 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 MRPS7Q9Y2R9 242 aaKnown RBP11.1□□□□□ -0.63
LIMS1-201ENST00000332345 OR2W1Q9Y3N9 320 aa11.1□□□□□ -0.63
LIMS1-201ENST00000332345 PSMB11A5LHX3 300 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 FAM25AB3EWG3 89 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 FAM25CB3EWG5 89 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 FAM25GB3EWG6 89 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 NBR2O15453 112 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 HPGDSO60760 199 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 HLA-DQB1P01920 261 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 CSF1P09603 554 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 PTHLHP12272 177 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 NFYAP23511 347 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-201ENST00000332345 TREML4Q6UXN2 200 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 ZNF383Q8NA42 475 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 OR4X2Q8NGF9 303 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 ADTRPQ96IZ2 230 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 RITA1Q96K30 269 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 GON7Q9BXV9 100 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 NECAP2Q9NVZ3 263 aa11.09□□□□□ -0.63
LIMS1-201ENST00000332345 J3QRK9 145 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 AP4M1O00189 453 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 OPN1MWP04001 364 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 OPN1MW2P0DN77 364 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 OPN1MW3P0DN78 364 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 RRASP10301 218 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 ELK1P19419 428 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 THBS3P49746 956 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 RPS16P62249 146 aaKnown RBP11.08□□□□□ -0.64
LIMS1-201ENST00000332345 SLC35B1P78383 322 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 CBX3Q13185 183 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 SPCS2Q15005 226 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 C5orf64Q2M2E5 130 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 LIN54Q6MZP7 749 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 PDPNQ86YL7 162 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 ZNF645Q8N7E2 425 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 OR5AP2Q8NGF4 316 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 FLYWCH2Q96CP2 140 aaKnown RBP11.08□□□□□ -0.64
LIMS1-201ENST00000332345 RBMXL1Q96E39 390 aaKnown RBP11.08□□□□□ -0.64
LIMS1-201ENST00000332345 TSNAXQ99598 290 aaKnown RBP11.08□□□□□ -0.64
LIMS1-201ENST00000332345 SLC35D1Q9NTN3 355 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 WNK1Q9H4A3 2382 aa11.08□□□□□ -0.64
LIMS1-201ENST00000332345 TCRBV4S1A1TA0A5B7 111 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 MEIS3P1A6NDR6 274 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 LINC01548A6NM66 108 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 TUSC2O75896 110 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 NDUFA3O95167 84 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 OR5H8P0DN80 308 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 CNTFRP26992 372 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 FCGR2CP31995 323 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 CD83Q01151 205 aa11.07□□□□□ -0.64
LIMS1-201ENST00000332345 CDK10Q15131 360 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms