RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RPA2P15927 270 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 VDAC1P21796 283 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 PSMB6P28072 239 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 RPL30P62888 115 aaKnown RBP11.58□□□□□ -0.56
SS18-201ENST00000269137 ZNF585BQ52M93 769 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 C11orf42Q8N5U0 333 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 HEXA-AS1Q9H8Q6 139 aa11.58□□□□□ -0.56
SS18-201ENST00000269137 CRYBG3Q68DQ2 2970 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 RAB29O14966 203 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 MPC2O95563 127 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 IGHV3-7P01780 117 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 ESCO2Q56NI9 601 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 NMSQ5H8A3 153 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 TMEM65Q6PI78 240 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 ZNF525Q8N782 197 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 OR8H1Q8NGG4 311 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 ZNF596Q8TC21 504 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 CENPEQ02224 2701 aa11.57□□□□□ -0.56
SS18-201ENST00000269137 HELZ2Q9BYK8 2649 aaKnown RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 PPIAL4CA0A0B4J2A2 164 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 PPIAL4GP0DN37 164 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 IGHV1-8P0DP01 117 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 ZNF16P17020 682 aaPredicted RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 DUTP33316 252 aaKnown RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 PDLIM4P50479 330 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 ERVFRD-1P60508 538 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 GNB2P62879 340 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 C11orf87Q6NUJ2 197 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 BTNL3Q6UXE8 466 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 ODF3L1Q8IXM7 274 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 LINC00311Q8N616 119 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 SSBP3Q9BWW4 388 aaPredicted RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 BARX1Q9HBU1 254 aaPredicted RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 GSKIPQ9P0R6 139 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 PTPN13Q12923 2485 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 LINC00473A8K010 186 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 PAX1P15863 534 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 BRWD1-AS2P59051 145 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 TEX261Q6UWH6 196 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 CD300LFQ8TDQ1 290 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 TCTEX1D2Q8WW35 142 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 LSM10Q969L4 123 aaKnown RBP11.56□□□□□ -0.56
SS18-201ENST00000269137 SPIN2AQ99865 258 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 SPIN2BQ9BPZ2 258 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 ZNF251Q9BRH9 671 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 SESN1Q9Y6P5 492 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 U3KQ87 197 aa11.56□□□□□ -0.56
SS18-201ENST00000269137 TENM4Q6N022 2769 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 FXYD6-FXYD2A0A087WZ82 144 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 SAA2-SAA4A0A096LPE2 208 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 A0A1W2PPE3 182 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 ANKRD34BA5PLL1 514 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 C22orf46C9J442 243 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 M0R1X1 148 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 IGKV1-39P01597 117 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 IGHV2-5P01817 119 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 IGKV1D-39P04432 117 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 LIPFP07098 398 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 SAA2P0DJI9 122 aaPredicted RBP11.55□□□□□ -0.56
SS18-201ENST00000269137 SLC25A6P12236 298 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 GNG10P50151 68 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 LRRC37A5PQ49AS3 106 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 RPL39P5Q59GN2 51 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 SPAG16Q8N0X2 631 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 LYG1Q8N1E2 194 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 ZNF680Q8NEM1 530 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 THAP6Q8TBB0 222 aa11.55□□□□□ -0.56
SS18-201ENST00000269137 LOC105371242A0A075B767 164 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 hCG_1809904A0A1W2PP81 198 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 A0A1W2PPE2 198 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 A0A1W2PR64 198 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 A0A1W2PRV1 198 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 RBFOX2O43251 390 aaKnown RBP eCLIP11.54□□□□□ -0.56
SS18-201ENST00000269137 LYL1P12980 280 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 SSTR2P30874 369 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 LPAR6P43657 344 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 NCR3LG1Q68D85 454 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 C1orf229Q6ZS94 237 aaPredicted RBP11.54□□□□□ -0.56
SS18-201ENST00000269137 ADTRPQ96IZ2 230 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 RNF126Q9BV68 326 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 BPESC1Q9GZL8 116 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 TMEM133Q9H2Q1 129 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 NARFLQ9H6Q4 476 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 ZFP57Q9NU63 452 aa11.54□□□□□ -0.56
SS18-201ENST00000269137 H0YIZ8 118 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 J3QR06 171 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 NDUFS8O00217 210 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 RAMP3O60896 148 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 PET100P0DJ07 73 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 KIR2DS2P43631 304 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 ATP5J2P56134 94 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 RAB32Q13637 225 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 PRSS54Q6PEW0 395 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 ZNF546Q86UE3 836 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 OR4D5Q8NGN0 318 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 OR9G1Q8NH87 305 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 TNFRSF14Q92956 283 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 S1PR3Q99500 378 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 MBD2Q9UBB5 411 aa11.53□□□□□ -0.56
SS18-201ENST00000269137 MED13LQ71F56 2210 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms