RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 RAMP3O60896 148 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 NDUFA3O95167 84 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 ARSBP15848 533 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 LUMP51884 338 aaPredicted RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 TMEM50BP56557 158 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 RPS25P62851 125 aaKnown RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 RUNX1Q01196 453 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 P2RY14Q15391 338 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 RPL39P5Q59GN2 51 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 C11orf87Q6NUJ2 197 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 TMEM65Q6PI78 240 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 MOB1BQ7L9L4 216 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 ZNF491Q8N8L2 437 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 OR11H1Q8NG94 326 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 SETD6Q8TBK2 473 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 HDHD3Q9BSH5 251 aaPredicted RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 URM1Q9BTM9 101 aaKnown RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 GHITMQ9H3K2 345 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 PLGRKTQ9HBL7 147 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 CHMP1AQ9HD42 196 aaPredicted RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 ISYNA1Q9NPH2 558 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 AK3Q9UIJ7 227 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 HSF4Q9ULV5 492 aa7.57□□□□□ -1.2
VPS41-201ENST00000265745 AK6Q9Y3D8 172 aaKnown RBP7.57□□□□□ -1.2
VPS41-201ENST00000265745 OR5H14A6NHG9 310 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 H0YJW9 148 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 I3L521 148 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 FCN1O00602 326 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 PROP1O75360 226 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 ARL6IP5O75915 188 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 SCTP09683 121 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 ZBTB25P24278 435 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 CRHBPP24387 322 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 PSMA1P25786 263 aaKnown RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 MC5RP33032 325 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 CEACAM6P40199 344 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 RAB9AP51151 201 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 CRIP2P52943 208 aaPredicted RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 CX3CL1P78423 397 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 CD69Q07108 199 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 MLLT11Q13015 90 aaPredicted RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 DCTN2Q13561 401 aaKnown RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 TRAM1Q15629 374 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 RAB11BQ15907 218 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 C2orf76Q3KRA6 126 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 C19orf54Q5BKX5 351 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 C9orf66Q5T8R8 295 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 ZNF660Q6AZW8 331 aaPredicted RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 FAM131AQ6UXB0 335 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 PRSS48Q7RTY5 328 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 OR5AN1Q8NGI8 311 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 OR1N2Q8NGR9 330 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 PTX4Q96A99 478 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 ARHGAP5-AS1Q96IT6 56 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 ABHD14BQ96IU4 210 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 MGLLQ99685 303 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 RNF5Q99942 180 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 C11orf54Q9H0W9 315 aaPredicted RBP7.56□□□□□ -1.2
VPS41-201ENST00000265745 FBXL15Q9H469 300 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 GNB4Q9HAV0 340 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 Q9N2K0 584 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 PARP11Q9NR21 331 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 OR1A1Q9P1Q5 309 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 KIAA1456Q9P272 454 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 MGAT4AQ9UM21 535 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 VSIG4Q9Y279 399 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 FBXO7Q9Y3I1 522 aa7.56□□□□□ -1.2
VPS41-201ENST00000265745 IGKV1-6A0A0C4DH72 117 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 SEC14L6B5MCN3 397 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 RRHO14718 337 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 LDLRAD4O15165 306 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 SOX15O60248 233 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 RBBP9O75884 186 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 EGR2P11161 476 aaPredicted RBP7.55□□□□□ -1.2
VPS41-201ENST00000265745 CALRP27797 417 aaKnown RBP7.55□□□□□ -1.2
VPS41-201ENST00000265745 MAP2K4P45985 399 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 VEGFCP49767 419 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 PSMD7P51665 324 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 CLDN12P56749 244 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 HLA-DRB3P79483 266 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 NDPQ00604 133 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 FABP5Q01469 135 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 PLAC9Q5JTB6 97 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 ASPHD1Q5U4P2 390 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 GLDNQ6ZMI3 551 aaPredicted RBP7.55□□□□□ -1.2
VPS41-201ENST00000265745 DRAXINQ8NBI3 349 aaPredicted RBP7.55□□□□□ -1.2
VPS41-201ENST00000265745 FAM3DQ96BQ1 224 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 OR5B12Q96R08 314 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 PECRQ9BY49 303 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 CCDC90BQ9GZT6 254 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 ACOT13Q9NPJ3 140 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 C12orf4Q9NQ89 552 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 RNF150Q9ULK6 438 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 WASHC3Q9Y3C0 194 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 LSM4Q9Y4Z0 139 aaKnown RBP7.55□□□□□ -1.2
VPS41-201ENST00000265745 NUBP2Q9Y5Y2 271 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 V9GY05 133 aa7.55□□□□□ -1.2
VPS41-201ENST00000265745 DNAH9Q9NYC9 4486 aa7.54□□□□□ -1.2
VPS41-201ENST00000265745 H7C2Y5 167 aa7.54□□□□□ -1.2
VPS41-201ENST00000265745 HSPA12AO43301 675 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms