RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NPVFQ9HCQ7 196 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 MTCH1Q9NZJ7 389 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 NXPH3O95157 252 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 DLK1P80370 383 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 EFNB3Q15768 340 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 ZNF672Q499Z4 452 aaPredicted RBP11.56□□□□□ -0.56
LDLR-201ENST00000252444 ZNF497Q6ZNH5 498 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 A0A1B0GV50 99 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 WDR82Q6UXN9 313 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 ZNRF4Q8WWF5 429 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 ALPK3Q96L96 1907 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 NUP214P35658 2090 aaPredicted RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 ASCL4Q6XD76 172 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 ZNF826PQ6ZT77 177 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 SELENOHQ8IZQ5 122 aaKnown RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 STPG2Q8N412 459 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 CABLES2Q9BTV7 478 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 E9PQ18 207 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 DEDDO75618 318 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 ZP1P60852 638 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 RPL11P62913 178 aaKnown RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 EWSR1Q01844 656 aaKnown RBP eCLIP11.55□□□□□ -0.56
LDLR-201ENST00000252444 RPL7L1Q6DKI1 246 aaKnown RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 MRGPRFQ96AM1 343 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 TOLLIPQ9H0E2 274 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 FBXL17Q9UF56 701 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 SH2D7A6NKC9 451 aaPredicted RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 C17orf51A8MQB3 221 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 HIST1H1EP10412 219 aaKnown RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 MEOX2P50222 304 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 FAM166AQ6J272 317 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 UBAC2Q8NBM4 344 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 SLC25A28Q96A46 364 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 TVP23CQ96ET8 276 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 PROK2Q9HC23 129 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 ZNF331Q9NQX6 463 aaPredicted RBP11.55□□□□□ -0.56
LDLR-201ENST00000252444 CHST1O43916 411 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 PDE6DO43924 150 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 UNC119Q13432 240 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 AVPI1Q5T686 147 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 LYZL4Q96KX0 146 aa11.55□□□□□ -0.56
LDLR-201ENST00000252444 TRBV6-7A0A0A0MS04 114 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 TOX4O94842 621 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 CXorf1O96002 111 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 SCTP09683 121 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 GATA4P43694 442 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 RELQ04864 619 aaPredicted RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 OR10S1Q8NGN2 331 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 METTL1Q9UBP6 276 aaKnown RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 TNFSF18Q9UNG2 199 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 MAP1LC3B2A6NCE7 125 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 LMX1BO60663 402 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 DKK1O94907 266 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 GALR1P47211 349 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 OR10G4Q8NGN3 311 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 OR10G9Q8NGN4 311 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 OR10G7Q8NGN6 311 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 MRPL32Q9BYC8 188 aaKnown RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 MAP1LC3BQ9GZQ8 125 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 HIF1ANQ9NWT6 349 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 CTXND1A0A1B0GTU2 59 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 NKX2-6A6NCS4 301 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 COLCA1Q6ZS62 124 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 MRPL30Q8TCC3 161 aaKnown RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 QTRT1Q9BXR0 403 aaKnown RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 PARP11Q9NR21 331 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 GNG13Q9P2W3 67 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 B4DEV8 164 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 IGHV1-46P01743 117 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 CLEC3BP05452 202 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 CD55P08174 381 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 TOR2AQ5JU69 321 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 TMA7Q9Y2S6 64 aaKnown RBP11.54□□□□□ -0.56
LDLR-201ENST00000252444 HEATR5BQ9P2D3 2071 aa11.54□□□□□ -0.56
LDLR-201ENST00000252444 NPIPB11E5RHQ5 1161 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 H7BYZ3 331 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 SSX4O60224 188 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 KBTBD11O94819 623 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 ZNF273Q14593 569 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 ARHGEF17Q96PE2 2063 aaPredicted RBP11.53□□□□□ -0.56
LDLR-201ENST00000252444 C20orf202A1L168 122 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 ZNF727A8MUV8 499 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 WNT5AP41221 380 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 TMEM187Q14656 261 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 MOGAT2Q3SYC2 334 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 FAM24AA6NFZ4 105 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 MFAP4P55083 255 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 A0A1B0GVG6 124 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 CLN5O75503 358 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 G6PCP35575 357 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 DYNLT3P51808 116 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 AQP10Q96PS8 301 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 SLX1AQ9BQ83 275 aa11.53□□□□□ -0.56
LDLR-201ENST00000252444 LYRM2Q9NU23 88 aaPredicted RBP11.53□□□□□ -0.56
LDLR-201ENST00000252444 UCP1P25874 307 aa11.52□□□□□ -0.56
LDLR-201ENST00000252444 IGSF11Q5DX21 431 aa11.52□□□□□ -0.56
LDLR-201ENST00000252444 DMRTC1Q5HYR2 192 aa11.52□□□□□ -0.56
LDLR-201ENST00000252444 C10orf113Q5VZT2 155 aa11.52□□□□□ -0.56
LDLR-201ENST00000252444 KLF2Q9Y5W3 355 aaPredicted RBP11.52□□□□□ -0.56
LDLR-201ENST00000252444 TRAV20A0A0B4J274 112 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms