RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 DRAM1Q8N682 238 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 GVQW1Q8N7I0 195 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 OR56B4Q8NH76 319 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 OR10J5Q8NHC4 309 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 EDARADDQ8WWZ3 215 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 C11orf54Q9H0W9 315 aaPredicted RBP13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 RAB18Q9NP72 206 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 SAA2-SAA4A0A096LPE2 208 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 FAM25AB3EWG3 89 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 FAM25CB3EWG5 89 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 FAM25GB3EWG6 89 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 CTDSP2O14595 271 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 LANCL1O43813 399 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 SAA2P0DJI9 122 aaPredicted RBP13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 FBLN7Q53RD9 439 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 HOGA1Q86XE5 327 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 TGIF2LXQ8IUE1 241 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 WDR12Q9GZL7 423 aaKnown RBP13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 MIXL1Q9H2W2 232 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 ANXA10Q9UJ72 324 aa13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 MRPS7Q9Y2R9 242 aaKnown RBP13.27□□□□□ -0.29
CCDC28A-202ENST00000611852 RGS5O15539 181 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 TXNL1O43396 289 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 CBX5P45973 191 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 OR3A3P47888 321 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 CNIH2Q6PI25 160 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF833PQ6ZTB9 187 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 MOB3BQ86TA1 216 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 THNSL2Q86YJ6 484 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 BEST4Q8NFU0 473 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 ABHD14BQ96IU4 210 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 GINS4Q9BRT9 223 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 GHITMQ9H3K2 345 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 PIPOXQ9P0Z9 390 aa13.26□□□□□ -0.29
CCDC28A-202ENST00000611852 MEIS3P1A6NDR6 274 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 RAB29O14966 203 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 NDUFA7O95182 113 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 LPLP06858 475 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 SNRNP70P08621 437 aaKnown RBP13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 CTXN2P0C2S0 81 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 FAM106CPP0CH98 169 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 PRSS3P35030 304 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 COMPP49747 757 aaPredicted RBP13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 RAG2P55895 527 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 FOXL1Q12952 345 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 DCTN2Q13561 401 aaKnown RBP13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF846Q147U1 533 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 Q6ZSV7 163 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 LAX1Q8IWV1 398 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 H1FOOQ8IZA3 346 aaPredicted RBP13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 CAPSLQ8WWF8 208 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF251Q9BRH9 671 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 AKIP1Q9NQ31 210 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 EXTL2Q9UBQ6 330 aa13.25□□□□□ -0.29
CCDC28A-202ENST00000611852 IGHV3-72A0A0B4J1Y9 119 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 FCER2P06734 321 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 SNX29P2Q8IUI4 249 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 SNAPC3Q92966 411 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 ADAM30Q9UKF2 790 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 RNF150Q9ULK6 438 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 STAB1Q9NY15 2570 aa13.24□□□□□ -0.29
CCDC28A-202ENST00000611852 TSPAN9O75954 239 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 OR8U9P0C7N5 309 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 EBI3Q14213 229 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 AWAT1Q58HT5 328 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 RPL39P5Q59GN2 51 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 FAM71F2Q6NXP2 309 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 OR8U1Q8NH10 309 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 OR4F5Q8NH21 305 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 GPX8Q8TED1 209 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 BORCS5Q969J3 196 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 RBM14Q96PK6 669 aaKnown RBP13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 S1PR3Q99500 378 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 MRPL20Q9BYC9 149 aaKnown RBP13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 IFT46Q9NQC8 304 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 ANAPC10Q9UM13 185 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF736B4DX44 427 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 PROP1O75360 226 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 OR2F2O95006 317 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 IGKV1D-33P01593 117 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 IGKV1-33P01594 117 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 MDKP21741 143 aaPredicted RBP13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 CD1BP29016 333 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 ARPC4P59998 168 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 HES1Q14469 280 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 SPANXN2Q5MJ10 180 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 C16orf82Q7Z2V1 217 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 SPATA3Q8NHX4 192 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 NABP2Q9BQ15 211 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 SLC25A33Q9BSK2 321 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 NPFFR1Q9GZQ6 430 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 SCPEP1Q9HB40 452 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 ZNF221Q9UK13 617 aa13.23□□□□□ -0.29
CCDC28A-202ENST00000611852 TPPPO94811 219 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 NFYAP23511 347 aaPredicted RBP13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 GPR12P47775 334 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 HNF4GQ14541 408 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 MFSD4AQ8N468 514 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 OR5AP2Q8NGF4 316 aa13.22□□□□□ -0.29
CCDC28A-202ENST00000611852 LINC01006Q8NI28 216 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms