RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 MMDQ15546 238 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 SFXN4Q6P4A7 337 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 C5orf24Q7Z6I8 188 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 C5orf56Q8N8D9 126 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 CITED2Q99967 270 aaPredicted RBP8.66□□□□□ -1.02
CLIP3-203ENST00000586457 ST6GALNAC5Q9BVH7 336 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 WNT10AQ9GZT5 417 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 DIABLOQ9NR28 239 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 LIN7CQ9NUP9 197 aaKnown RBP8.66□□□□□ -1.02
CLIP3-203ENST00000586457 RNF150Q9ULK6 438 aa8.66□□□□□ -1.02
CLIP3-203ENST00000586457 TSSC4Q9Y5U2 329 aaPredicted RBP8.66□□□□□ -1.02
CLIP3-203ENST00000586457 SAA2-SAA4A0A096LPE2 208 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 SHISA3A0PJX4 238 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 ZNF736B4DX44 427 aaPredicted RBP8.65□□□□□ -1.02
CLIP3-203ENST00000586457 AP4M1O00189 453 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 TSPAN15O95858 294 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 SAA2P0DJI9 122 aaPredicted RBP8.65□□□□□ -1.02
CLIP3-203ENST00000586457 SNRPBP14678 240 aaKnown RBP8.65□□□□□ -1.02
CLIP3-203ENST00000586457 PLA2G7Q13093 441 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 LSAMPQ13449 338 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 MOGAT2Q3SYC2 334 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 FAM71F2Q6NXP2 309 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 ZNF833PQ6ZTB9 187 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 ABHD14BQ96IU4 210 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 MRPL20Q9BYC9 149 aaKnown RBP8.65□□□□□ -1.02
CLIP3-203ENST00000586457 C11orf54Q9H0W9 315 aaPredicted RBP8.65□□□□□ -1.02
CLIP3-203ENST00000586457 RDH8Q9NYR8 311 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 OR1A1Q9P1Q5 309 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 ETV7Q9Y603 341 aa8.65□□□□□ -1.02
CLIP3-203ENST00000586457 OR5H14A6NHG9 310 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 FOXI3A8MTJ6 420 aaPredicted RBP8.64□□□□□ -1.03
CLIP3-203ENST00000586457 NUDT19A8MXV4 375 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 RAB27BO00194 218 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 ITGB1BP1O14713 200 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 TMEM127O75204 238 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 APOA2P02652 100 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 PF4P02776 101 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 AMY1AP04745 511 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 AMY2AP04746 511 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 FCGR3AP08637 254 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 CTXN2P0C2S0 81 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 GSTT2P0CG29 244 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 GSTT2BP0CG30 244 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 VDAC1P21796 283 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 SCAND1P57086 179 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 ACTBP60709 375 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 LSM3P62310 102 aaKnown RBP8.64□□□□□ -1.03
CLIP3-203ENST00000586457 HIST2H2BDQ6DRA6 164 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 ZNF329Q86UD4 541 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 COMMD1Q8N668 190 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 LGALS14Q8TCE9 139 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 S100A16Q96FQ6 103 aaKnown RBP8.64□□□□□ -1.03
CLIP3-203ENST00000586457 NABP2Q9BQ15 211 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 ABCG5Q9H222 651 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 RHBDL2Q9NX52 303 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 ZNF230Q9UIE0 474 aaPredicted RBP8.64□□□□□ -1.03
CLIP3-203ENST00000586457 LINC00527Q9UJ94 153 aa8.64□□□□□ -1.03
CLIP3-203ENST00000586457 MFNGO00587 321 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 NBR2O15453 112 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 IGHG2P01859 326 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 CLEC2LP0C7M8 214 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 OR8U9P0C7N5 309 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 OR5H8P0DN80 308 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 CD33P20138 364 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 F2RL1P55085 397 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 CD83Q01151 205 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 PNLIPRP3Q17RR3 467 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 FBLN7Q53RD9 439 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 RPL39P5Q59GN2 51 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 IGSF11Q5DX21 431 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 HACD4Q5VWC8 232 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 LIN54Q6MZP7 749 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 TEX38Q6PEX7 206 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 TMEM65Q6PI78 240 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 NR2C2APQ86WQ0 139 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 ODF3L1Q8IXM7 274 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 OR8U1Q8NH10 309 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 ABHD5Q8WTS1 349 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 MAFIPQ8WZ33 124 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 CYYR1Q96J86 154 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 NOL4LQ96MY1 436 aaPredicted RBP8.63□□□□□ -1.03
CLIP3-203ENST00000586457 DCSTAMPQ9H295 470 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 RNF167Q9H6Y7 350 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 ZNF107Q9UII5 783 aaPredicted RBP8.63□□□□□ -1.03
CLIP3-203ENST00000586457 WASHC3Q9Y3C0 194 aa8.63□□□□□ -1.03
CLIP3-203ENST00000586457 PKD1L1Q8TDX9 2849 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 TRAV18A0A075B6X5 111 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 SMIM31A0A1B0GVY4 71 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 M0R1X1 148 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 RBBP9O75884 186 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 TFAP2AP05549 437 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 DTYMKP23919 212 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 CD40LGP29965 261 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 ARPC4P59998 168 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 RPS16P62249 146 aaKnown RBP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 SRSF7Q16629 238 aaKnown RBP eCLIP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 CXorf66Q5JRM2 361 aaPredicted RBP8.62□□□□□ -1.03
CLIP3-203ENST00000586457 FAM131AQ6UXB0 335 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 STPG2Q8N412 459 aa8.62□□□□□ -1.03
CLIP3-203ENST00000586457 Q8N6K4 173 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms