RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 JAGN1Q8N5M9 183 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 GALMQ96C23 342 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 IFI27L2Q9H2X8 130 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 RNF150Q9ULK6 438 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 LRRC42Q9Y546 428 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 A3GALT2U3KPV4 340 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 TRBV5-7A0A0A0MS05 114 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 PDCD6O75340 191 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 SMN1Q16637 294 aaKnown RBP13.49□□□□□ -0.25
CLK3-221ENST00000568139 ACTBL2Q562R1 376 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 YIF1BQ5BJH7 314 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 FAM131AQ6UXB0 335 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 PPP1R27Q86WC6 154 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 OR2AK2Q8NG84 335 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 OR14A2Q96R54 314 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 SPATA25Q9BR10 227 aa13.49□□□□□ -0.25
CLK3-221ENST00000568139 WBP4O75554 376 aaKnown RBP13.48□□□□□ -0.25
CLK3-221ENST00000568139 CRTAPO75718 401 aaPredicted RBP13.48□□□□□ -0.25
CLK3-221ENST00000568139 CT45A6P0DMU7 189 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 CT45A5P0DMU8 189 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 CT45A7P0DMV0 189 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 HMGN3Q15651 99 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 UNQ5815/PRO19632Q6UWF5 114 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 ANKRD13BQ86YJ7 626 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 PGLYRP3Q96LB9 341 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 MS4A10Q96PG2 267 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 SLC29A1Q99808 456 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 SLA2Q9H6Q3 261 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 CNOT2Q9NZN8 540 aaKnown RBP13.48□□□□□ -0.25
CLK3-221ENST00000568139 PIPOXQ9P0Z9 390 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 NKX1-2Q9UD57 310 aaPredicted RBP13.48□□□□□ -0.25
CLK3-221ENST00000568139 GAB2Q9UQC2 676 aa13.48□□□□□ -0.25
CLK3-221ENST00000568139 OR5H14A6NHG9 310 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 RAB29O14966 203 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 MC5RP33032 325 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 TPPP2P59282 170 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 PLGLAQ15195 96 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 ZFP1Q6P2D0 407 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 ZNF562Q6V9R5 426 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 LFNGQ8NES3 379 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 ABHD5Q8WTS1 349 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 RNF5Q99942 180 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 FAM103A1Q9BTL3 118 aaKnown RBP13.47□□□□□ -0.25
CLK3-221ENST00000568139 C9orf16Q9BUW7 83 aa13.47□□□□□ -0.25
CLK3-221ENST00000568139 A0A1W2PPK0 400 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 H0YJW9 148 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 ST8SIA5O15466 376 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 RBBP9O75884 186 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 BAG2O95816 211 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 CD40LGP29965 261 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 HAGHQ16775 308 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 RPL39P5Q59GN2 51 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 GLDNQ6ZMI3 551 aaPredicted RBP13.46□□□□□ -0.25
CLK3-221ENST00000568139 OR5AN1Q8NGI8 311 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 RSRP1Q9BUV0 290 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 RANGRFQ9HD47 186 aaPredicted RBP13.46□□□□□ -0.25
CLK3-221ENST00000568139 STEAP1Q9UHE8 339 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 CLEC2DQ9UHP7 191 aa13.46□□□□□ -0.25
CLK3-221ENST00000568139 DIMT1Q9UNQ2 313 aaKnown RBP13.46□□□□□ -0.25
CLK3-221ENST00000568139 EXOSC1Q9Y3B2 195 aaKnown RBP13.46□□□□□ -0.25
CLK3-221ENST00000568139 TFAP2AP05549 437 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 GSTP1P09211 210 aaKnown RBP13.45□□□□□ -0.26
CLK3-221ENST00000568139 ARSBP15848 533 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 ZP3P21754 424 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 CAPGP40121 348 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 ZFP41Q8N8Y5 198 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 ZNF485Q8NCK3 441 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 SULT4A1Q9BR01 284 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 ABRACLQ9P1F3 81 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 SLC23A1Q9UHI7 598 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 WASHC3Q9Y3C0 194 aa13.45□□□□□ -0.26
CLK3-221ENST00000568139 IRGMA1A4Y4 181 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 ITGB1BP1O14713 200 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 TRGV3P03979 118 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 SNRPBP14678 240 aaKnown RBP13.44□□□□□ -0.26
CLK3-221ENST00000568139 MYL12AP19105 171 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 KLF5Q13887 457 aaPredicted RBP13.44□□□□□ -0.26
CLK3-221ENST00000568139 IL34Q6ZMJ4 242 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 IL1F10Q8WWZ1 152 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 FAM46BQ96A09 425 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 DERL3Q96Q80 235 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 CLCC1Q96S66 551 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 UQCC2Q9BRT2 126 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 AGMATQ9BSE5 352 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 METTL1Q9UBP6 276 aaKnown RBP13.44□□□□□ -0.26
CLK3-221ENST00000568139 GHRLQ9UBU3 117 aa13.44□□□□□ -0.26
CLK3-221ENST00000568139 HYDINQ4G0P3 5121 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 H0Y980 276 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 H7C2Y5 167 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 CA2P00918 260 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 IFNA6P05013 189 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 PSG5Q15238 335 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 ZNF880Q6PDB4 577 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 NKAIN3Q8N8D7 197 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 ABHD14BQ96IU4 210 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 NEDD4LQ96PU5 975 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 THAP7Q9BT49 309 aaPredicted RBP13.43□□□□□ -0.26
CLK3-221ENST00000568139 FAAP24Q9BTP7 215 aa13.43□□□□□ -0.26
CLK3-221ENST00000568139 H3BUA1 57 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 SLC22A1O15245 554 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms