RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CLEC12BQ2HXU8 276 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 C4orf17Q53FE4 359 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 HAPLN4Q86UW8 402 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 TRIB1Q96RU8 372 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 ZPBPQ9BS86 351 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 DDA1Q9BW61 102 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 GVINP1Q7Z2Y8 2422 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 ADGRG4Q8IZF6 3080 aa11.39□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A10PA6NDY2 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A18PA6NE21 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A16PA6NEW6 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A20PA6NIJ5 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A8PA6NJQ4 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A7PA6NKC0 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A22PA8MWA6 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A12PA8MX19 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A5PA8MXJ8 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A23PA8MXZ1 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 KLRC4-KLRK1H3BQV0 150 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 RBMXL2O75526 392 aaKnown RBP11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A15PP0C7V4 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A13PP0C7W8 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A14PP0C7W9 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM90A24PP0C7X0 464 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ZNF674Q2M3X9 581 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 NRN1LQ496H8 165 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ZNF585BQ52M93 769 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 CLEC2AQ6UVW9 174 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ZNF561Q8N587 486 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ATG101Q9BSB4 218 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 FAM234AQ9H0X4 552 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 METRNQ9UJH8 293 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 NKX2-8O15522 239 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 SYNGR2O43760 224 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 IFNA5P01569 189 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 OR8U8P0C7N1 319 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 AGAP20933 346 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 S100GP29377 79 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ERVFRD-1P60508 538 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 RAB2AP61019 212 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 UBE2NP61088 152 aaKnown RBP11.38□□□□□ -0.59
CLK3-215ENST00000564353 PSG7Q13046 419 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 RNPS1Q15287 305 aaKnown RBP11.38□□□□□ -0.59
CLK3-215ENST00000564353 TBC1D28Q2M2D7 210 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 ZNF766Q5HY98 468 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 SAXO1Q8IYX7 474 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 COMMD1Q8N668 190 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 DRAM1Q8N682 238 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 MRGPRDQ8TDS7 321 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 CDH20Q9HBT6 801 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 CLN8Q9UBY8 286 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 MPC1Q9Y5U8 109 aa11.38□□□□□ -0.59
CLK3-215ENST00000564353 CADP27708 2225 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 J3QT63 122 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 SMPD2O60906 423 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 CLDN1O95832 211 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 CTXN2P0C2S0 81 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 IGHV1-2P23083 117 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 IL24Q13007 206 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 ZNF726P1Q15940 193 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 Q6ZR03 302 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 CLDND2Q8NHS1 167 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 SCGB1C1Q8TD33 95 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 Q8WTZ3 238 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 OR2D2Q9H210 308 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 TMPRSS5Q9H3S3 457 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 CHD3Q12873 2000 aaKnown RBP11.37□□□□□ -0.59
CLK3-215ENST00000564353 USF3Q68DE3 2245 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 CD46P15529 392 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 NDUFA6P56556 154 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 SOX8P57073 446 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 TAS2R30P59541 319 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 RPL30P62888 115 aaKnown RBP11.37□□□□□ -0.59
CLK3-215ENST00000564353 RTL8AQ9BWD3 113 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 GPR87Q9BY21 358 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 EGLN1Q9GZT9 426 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 KLF13Q9Y2Y9 288 aaPredicted RBP11.37□□□□□ -0.59
CLK3-215ENST00000564353 PCNX2A6NKB5 2137 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 SPTBN2O15020 2390 aa11.37□□□□□ -0.59
CLK3-215ENST00000564353 OR5B21A6NL26 309 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 COL8A2P25067 703 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 SSTR5P35346 364 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 GABRA2P47869 451 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 EDDM3AQ14507 147 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 Q6ZS49 121 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 REC114Q7Z4M0 266 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 FGFRL1Q8N441 504 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 ZDHHC16Q969W1 377 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 ABHD14BQ96IU4 210 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 PRO1933Q9H354 126 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 MARCH11A6NNE9 402 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 CYB5BO43169 146 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 MMP9P14780 707 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 KIAA0141Q14154 515 aaPredicted RBP11.36□□□□□ -0.59
CLK3-215ENST00000564353 RHEBQ15382 184 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 OR8G1Q15617 311 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 ZNF787Q6DD87 383 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 VWA1Q6PCB0 445 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 MDS2Q8NDY4 140 aa11.36□□□□□ -0.59
CLK3-215ENST00000564353 LFNGQ8NES3 379 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms