RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 UFSP2Q9NUQ7 469 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 TRGC2P03986 189 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 IGHV1-2P23083 117 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 RFESDQ8TAC1 157 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 SCGB1C1Q8TD33 95 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 MALSU1Q96EH3 234 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 TVP23CQ96ET8 276 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 RTL8AQ9BWD3 113 aa10.85□□□□□ -0.67
LDLR-207ENST00000558013 TRGV5A0A0B4J1U4 118 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 IGHV3-43A0A0B4J1X8 118 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 BTBD17A6NE02 478 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 DEFB108AA8MXU0 73 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 KLRC4-KLRK1H3BQV0 150 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 SMIM6P0DI80 62 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 IGHV3-43DP0DP04 118 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 CD200P41217 278 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 C4orf17Q53FE4 359 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 EDARADDQ8WWZ3 215 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 DOK5Q9P104 306 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 CLN8Q9UBY8 286 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 METRNQ9UJH8 293 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 DFFBO76075 338 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 BRWD1-AS2P59051 145 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 ARG2P78540 354 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 TBC1D28Q2M2D7 210 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 LINC00596Q86U02 117 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 DCTN5Q9BTE1 182 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 OR2D2Q9H210 308 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 KLF13Q9Y2Y9 288 aaPredicted RBP10.84□□□□□ -0.67
LDLR-207ENST00000558013 C21orf140B9A014 251 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 CLDN1O95832 211 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 IFNA17P01571 189 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 S100A8P05109 93 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 EIF2S3P41091 472 aaKnown RBP10.84□□□□□ -0.67
LDLR-207ENST00000558013 RAB2AP61019 212 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 OR8G1Q15617 311 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 GATAD1Q8WUU5 269 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 ZDHHC16Q969W1 377 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 SMDT1Q9H4I9 107 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 OBP2BQ9NPH6 170 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 TMEM9BQ9NQ34 198 aa10.84□□□□□ -0.67
LDLR-207ENST00000558013 TRAV20A0A0B4J274 112 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 CEBPZOSA8MTT3 80 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 C12orf77C9JDV5 145 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 MLNRO43193 412 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 IGHV3-13P01766 116 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 IGHV3-7P01780 117 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 PGA5P0DJD9 388 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 MAS1LP35410 378 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 KHDC3LQ587J8 217 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 HES3Q5TGS1 186 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 PRAMEF6Q5VXH4 476 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 RPP25LQ8N5L8 163 aaKnown RBP10.83□□□□□ -0.68
LDLR-207ENST00000558013 OR8G5Q8NG78 346 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 ZNF251Q9BRH9 671 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 RBKSQ9H477 322 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 MSL2Q9HCI7 577 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 LRP5LA4QPB2 252 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 HAND1O96004 215 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 BCL2P10415 239 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 LTC4SQ16873 150 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 ZNF766Q5HY98 468 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 MRGPRDQ8TDS7 321 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 OPA3Q9H6K4 179 aa10.83□□□□□ -0.68
LDLR-207ENST00000558013 C17orf98A8MV24 154 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BKO60814 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 S1PR2O95136 353 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BJP06899 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BOP23527 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 COL8A2P25067 703 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BBP33778 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 SSTR5P35346 364 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 MDH2P40926 338 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 GLIPR1P48060 266 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BDP58876 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BCP62807 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST2H2BEQ16778 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 LRRC75BQ2VPJ9 315 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 ALKBH2Q6NS38 261 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 CNEP1R1Q8N9A8 125 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 KLF14Q8TD94 323 aaPredicted RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 CA5BP1Q8WTZ4 195 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BHQ93079 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 LSM10Q969L4 123 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BNQ99877 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 HIST1H2BMQ99879 126 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 UNKLQ9H9P5 680 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 CDH20Q9HBT6 801 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 MBNL3Q9NUK0 354 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 ROS1P08922 2347 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 SH2D1BO14796 132 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 CLEC12BQ2HXU8 276 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 WDR61Q9GZS3 305 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 HEATR1Q9H583 2144 aaKnown RBP10.82□□□□□ -0.68
LDLR-207ENST00000558013 NPIPB11E5RHQ5 1161 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 CD46P15529 392 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 BMP5P22003 454 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 FABP6P51161 128 aa10.82□□□□□ -0.68
LDLR-207ENST00000558013 UBE2NP61088 152 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms