RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 RAB6AP20340 208 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 HLA-DRB3P79483 266 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 ZNF329Q86UD4 541 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 FAM71E2Q8N5Q1 922 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR2AK2Q8NG84 335 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR4F17Q8NGA8 305 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR8H1Q8NGG4 311 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 PTX4Q96A99 478 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 R3HDM4Q96D70 268 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 RITA1Q96K30 269 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR4F4Q96R69 305 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 CMSS1Q9BQ75 279 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 AGMATQ9BSE5 352 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 MRPL20Q9BYC9 149 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR51E2Q9H255 320 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 C12orf4Q9NQ89 552 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 LIN7CQ9NUP9 197 aaKnown RBP8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 OR1A1Q9P1Q5 309 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 SLC23A1Q9UHI7 598 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 MGAT4AQ9UM21 535 aa8.11□□□□□ -1.11
CCDC88C-206ENST00000553437 A0A1W2PRX2 142 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 SMIM30A4D0T7 59 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 PSMB11A5LHX3 300 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 CCDC160A6NGH7 325 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 NOTOA8MTQ0 251 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 SERPINE3A8MV23 424 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 G3V4G9 280 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 MFNGO00587 321 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 PROP1O75360 226 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 CEACAM6P40199 344 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 GPR12P47775 334 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 SAMD5Q5TGI4 173 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 SLC35E3Q7Z769 313 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 TPRA1Q86W33 373 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 C1QL4Q86Z23 238 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 STPG2Q8N412 459 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 OR4X2Q8NGF9 303 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 OR10R2Q8NGX6 335 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 CHPT1Q8WUD6 406 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 RAB3CQ96E17 227 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 TOLLIPQ9H0E2 274 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 C11orf54Q9H0W9 315 aaPredicted RBP8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 PIPOXQ9P0Z9 390 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 LINC00527Q9UJ94 153 aa8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 TSSC4Q9Y5U2 329 aaPredicted RBP8.1□□□□□ -1.11
CCDC88C-206ENST00000553437 TET2Q6N021 2002 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 TRDCB7Z8K6 153 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 ZNF701M0R085 212 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 FCGR3AP08637 254 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 CT45A6P0DMU7 189 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 CT45A5P0DMU8 189 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 CT45A7P0DMV0 189 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 HIST1H1DP16402 221 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 GNB3P16520 340 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 ZBTB25P24278 435 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 BEAN1Q3B7T3 259 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 PDLIM3Q53GG5 364 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 RPL39P5Q59GN2 51 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 KPRPQ5T749 579 aaPredicted RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 FAM71F2Q6NXP2 309 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 WFDC9Q8NEX5 89 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 ABHD14BQ96IU4 210 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 RASL11BQ9BPW5 248 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 HSPB9Q9BQS6 159 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 RNF167Q9H6Y7 350 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 RSL24D1Q9UHA3 163 aaKnown RBP8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 SSR3Q9UNL2 185 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 CEPT1Q9Y6K0 416 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 RYR3Q15413 4870 aa8.09□□□□□ -1.11
CCDC88C-206ENST00000553437 METTL21EPA6NDL7 271 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 AP4M1O00189 453 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 RAB29O14966 203 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CD3GP09693 182 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CLEC2LP0C7M8 214 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 GADD45AP24522 165 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CNTFRP26992 372 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 SDC2P34741 201 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 ACTBP60709 375 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CFHR3Q02985 330 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 NEDD8Q15843 81 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 SFXN4Q6P4A7 337 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 GPR141Q7Z602 305 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 FOXRED2Q8IWF2 684 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 NPBQ8NG41 125 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 OR4A4PQ8NGN8 299 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 KCTD7Q96MP8 289 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CHCHD6Q9BRQ6 235 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 CABLES2Q9BTV7 478 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 GHITMQ9H3K2 345 aa8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 ELF5Q9UKW6 265 aaPredicted RBP8.08□□□□□ -1.12
CCDC88C-206ENST00000553437 DNAH3Q8TD57 4116 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 A0A075B6Q4 140 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 IGKV1D-8A0A087WSZ0 117 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 H0YJW9 148 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 FABP7O15540 132 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 HSPA12AO43301 675 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 NDUFA3O95167 84 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 IGF1P05019 195 aa8.07□□□□□ -1.12
CCDC88C-206ENST00000553437 GSTT2P0CG29 244 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms