RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 C11orf54Q9H0W9 315 aaPredicted RBP11.2□□□□□ -0.62
USP28-209ENST00000540925 GHITMQ9H3K2 345 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 RNF167Q9H6Y7 350 aa11.2□□□□□ -0.62
USP28-209ENST00000540925 SERPINE3A8MV23 424 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 RAB29O14966 203 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 PLXNB1O43157 2135 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 DIRAS3O95661 229 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CT45A6P0DMU7 189 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CT45A5P0DMU8 189 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CT45A7P0DMV0 189 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CD36P16671 472 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 ZBTB25P24278 435 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 GPR12P47775 334 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 SRSF7Q16629 238 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP28-209ENST00000540925 Q6ZS49 121 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 SLC35E3Q7Z769 313 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CHPT1Q8WUD6 406 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 KCTD7Q96MP8 289 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CHCHD6Q9BRQ6 235 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 CENPOQ9BU64 300 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 PIPOXQ9P0Z9 390 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 ZNF580Q9UK33 172 aa11.19□□□□□ -0.62
USP28-209ENST00000540925 TSSC4Q9Y5U2 329 aaPredicted RBP11.19□□□□□ -0.62
USP28-209ENST00000540925 PSMB11A5LHX3 300 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 METTL21EPA6NDL7 271 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 NCBP2LA6PVI3 153 aaKnown RBP11.18□□□□□ -0.62
USP28-209ENST00000540925 CLEC2LP0C7M8 214 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 CEACAM6P40199 344 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 CFHR3Q02985 330 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 RPL39P5Q59GN2 51 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 KPRPQ5T749 579 aaPredicted RBP11.18□□□□□ -0.62
USP28-209ENST00000540925 SAMD5Q5TGI4 173 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 STPG2Q8N412 459 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 NPBQ8NG41 125 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 OR4X2Q8NGF9 303 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 OR4A4PQ8NGN8 299 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 EDARADDQ8WWZ3 215 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 ABHD14BQ96IU4 210 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 HSPB9Q9BQS6 159 aa11.18□□□□□ -0.62
USP28-209ENST00000540925 ELF5Q9UKW6 265 aaPredicted RBP11.18□□□□□ -0.62
USP28-209ENST00000540925 TRBV6-7A0A0A0MS04 114 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 FABP7O15540 132 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 NDUFA3O95167 84 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 TNFAIP8O95379 198 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 IGF1P05019 195 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 CD3GP09693 182 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 SCAND1P57086 179 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 ACTBP60709 375 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 DEFA6Q01524 100 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 IGSF11Q5DX21 431 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 ZNF329Q86UD4 541 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 RNF152Q8N8N0 203 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 WFDC9Q8NEX5 89 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 OR4F17Q8NGA8 305 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 OR5AN1Q8NGI8 311 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 LGALS14Q8TCE9 139 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 R3HDM4Q96D70 268 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 YIPF6Q96EC8 236 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 OR4F4Q96R69 305 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 RDH8Q9NYR8 311 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 DAPK2Q9UIK4 370 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 LINC00527Q9UJ94 153 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 NOTCH3Q9UM47 2321 aa11.17□□□□□ -0.62
USP28-209ENST00000540925 IGKV1D-8A0A087WSZ0 117 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 A0A087WXM4 84 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 LOC100506127A0A0U1RQW1 187 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 TCRBV4S1A1TA0A5B7 111 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 OR5H14A6NHG9 310 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 H0YJW9 148 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 AP4M1O00189 453 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 GSTT2P0CG29 244 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 GSTT2BP0CG30 244 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 SNRPBP14678 240 aaKnown RBP11.16□□□□□ -0.62
USP28-209ENST00000540925 DTYMKP23919 212 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 CNTFRP26992 372 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 SERPINB10P48595 397 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 KIR2DS1Q14954 304 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 BEAN1Q3B7T3 259 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 FAM131AQ6UXB0 335 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 FOXRED2Q8IWF2 684 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 TSPAN14Q8NG11 270 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 SLC25A38Q96DW6 304 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 ATG5Q9H1Y0 275 aa11.16□□□□□ -0.62
USP28-209ENST00000540925 ZNF230Q9UIE0 474 aaPredicted RBP11.16□□□□□ -0.62
USP28-209ENST00000540925 ZNF107Q9UII5 783 aaPredicted RBP11.16□□□□□ -0.62
USP28-209ENST00000540925 A0A075B6Q4 140 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 A0A1W2PRX2 142 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 G3V4G9 280 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 HSPA12AO43301 675 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 HLA-DRB1P01911 266 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 SOX6P35712 828 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 RPL23AP62750 156 aaKnown RBP11.15□□□□□ -0.62
USP28-209ENST00000540925 MXD1Q05195 221 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 ARL6IP1Q15041 203 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 MMDQ15546 238 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 ZNF260Q3ZCT1 412 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 CDNFQ49AH0 187 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 PDLIM3Q53GG5 364 aaPredicted RBP11.15□□□□□ -0.62
USP28-209ENST00000540925 HACD4Q5VWC8 232 aa11.15□□□□□ -0.62
USP28-209ENST00000540925 ETV3LQ6ZN32 361 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms