RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 IGKV1-6A0A0C4DH72 117 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 A0A1B0GX30 115 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 LYRM1O43325 122 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 TUSC2O75896 110 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 MSMBP08118 114 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 PRTN3P24158 256 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 FCGR2CP31995 323 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 GZMKP49863 264 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 DVL1P1P54792 670 aaPredicted RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 UCP3P55916 312 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 ARF6P62330 175 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 LCN2P80188 198 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 ZNF273Q14593 569 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 HERPUD1Q15011 391 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 RNASE12Q5GAN4 147 aaKnown RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 CYB5R2Q6BCY4 276 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 BTNL3Q6UXE8 466 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 ZNF782Q6ZMW2 699 aaPredicted RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 TCF23Q7RTU1 214 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 H1FOOQ8IZA3 346 aaPredicted RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 FAM185AQ8N0U4 392 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 OR4C16Q8NGL9 310 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 OR1L1Q8NH94 360 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 ZNF596Q8TC21 504 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 IL1F10Q8WWZ1 152 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 MAFIPQ8WZ33 124 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 SCGB3A2Q96PL1 93 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 SLC6A7Q99884 636 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 TINAGL1Q9GZM7 467 aaPredicted RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 METTL8Q9H825 291 aaKnown RBP6.05□□□□□ -1.44
CD44-228ENST00000528455 HEXA-AS1Q9H8Q6 139 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 OR2S2Q9NQN1 319 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 MMP26Q9NRE1 261 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 EHFQ9NZC4 300 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 COPZ2Q9P299 210 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 JPT1Q9UK76 154 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 OR2W1Q9Y3N9 320 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 INSIG2Q9Y5U4 225 aa6.05□□□□□ -1.44
CD44-228ENST00000528455 CR1P17927 2039 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 JMJD1CQ15652 2540 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 A0A0A6YYJ9 748 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 INAFM1C9JVW0 142 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 J3QLI3 93 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 M0QYG6 137 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 SDCBPO00560 298 aaPredicted RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 BET1O15155 118 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 HSPA12AO43301 675 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 SLC22A5O76082 557 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 IGHV1-8P0DP01 117 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 CCL3L1P16619 93 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 CD34P28906 385 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 SLC6A1P30531 599 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 SSTR5P35346 364 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 LUMP51884 338 aaPredicted RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 PRRX1P54821 245 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 SURF2Q15527 256 aaPredicted RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 TMEM249Q2WGJ8 235 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 C5orf24Q7Z6I8 188 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 LHFPL1Q86WI0 220 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 PRR18Q8N4B5 295 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 LINC00311Q8N616 119 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 Q8N7P7 452 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 POC5Q8NA72 575 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 MAPK1IP1LQ8NDC0 245 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 OR4D10Q8NGI6 311 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 OR5AN1Q8NGI8 311 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 OR51S1Q8NGJ8 323 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 OR56B4Q8NH76 319 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 TNFRSF14Q92956 283 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 TMEM186Q96B77 213 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 GINS4Q9BRT9 223 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 AGMATQ9BSE5 352 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 C11orf54Q9H0W9 315 aaPredicted RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 ALX4Q9H161 411 aaPredicted RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 TMEM133Q9H2Q1 129 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 MCUBQ9NWR8 336 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 RDH8Q9NYR8 311 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 TBC1D24Q9ULP9 559 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 FN1P02751 2386 aaKnown RBP6.04□□□□□ -1.44
CD44-228ENST00000528455 ABCA1O95477 2261 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 ABCA2Q9BZC7 2435 aa6.04□□□□□ -1.44
CD44-228ENST00000528455 WNK2Q9Y3S1 2297 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 LINC00854A0A1B0GVQ3 168 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 FAM240BA0A1B0GVZ2 78 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 J3QR06 171 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 MMP23AO75900 390 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 TOX4O94842 621 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 TGFAP01135 160 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 TCRBP04435 133 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 IGHV4-31P0DP07 118 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 MMP9P14780 707 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 OMGP23515 440 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 RAB7AP51149 207 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 ZNF134P52741 427 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 MSMO1Q15800 293 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 RGS21Q2M5E4 152 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 PLA1AQ53H76 456 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 AADACL3Q5VUY0 350 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 METTL11BQ5VVY1 283 aa6.03□□□□□ -1.44
CD44-228ENST00000528455 DCAF12L2Q5VW00 463 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms