RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ARSJQ5FYB0 599 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-230ENST00000495090 COL5A1-AS1Q5SY13 56 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 PRAMEF20Q5VT98 475 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 MOB1BQ7L9L4 216 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 NEK7Q8TDX7 302 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 RAB1CQ92928 201 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 SDSLQ96GA7 329 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 KCNIP2Q9NS61 270 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 HSPB7Q9UBY9 170 aa8.21□□□□□ -1.1
SYNE1-230ENST00000495090 ERRFI1Q9UJM3 462 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-230ENST00000495090 TNRC6BQ9UPQ9 1833 aaKnown RBP8.2□□□□□ -1.1
SYNE1-230ENST00000495090 A0A0J9YW62 118 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 RNF212BA8MTL3 300 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 C11orf94C9JXX5 98 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 PAGE4O60829 102 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 B4GALT1P15291 398 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 NPPCP23582 126 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 NXPH1P58417 271 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 FFAR4Q5NUL3 377 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 FAM180AQ6UWF9 173 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 TOMM20LQ6UXN7 152 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 Q6ZWC4 215 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 ZDHHC23Q8IYP9 409 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 PRR18Q8N4B5 295 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 SRXN1Q9BYN0 137 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 OR2J1Q9GZK6 312 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 OPN3Q9H1Y3 402 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-230ENST00000495090 MTCH1Q9NZJ7 389 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 ZFP30Q9Y2G7 519 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 KIAA2026Q5HYC2 2103 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 KIAA1549Q9HCM3 1950 aa8.2□□□□□ -1.1
SYNE1-230ENST00000495090 CHD3Q12873 2000 aaKnown RBP8.19□□□□□ -1.1
SYNE1-230ENST00000495090 TRANK1O15050 2925 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 PMS2P5A8MQ11 134 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 C17orf112F2Z3M2 114 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 NUPR1O60356 82 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 MMP23AO75900 390 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 KRASP01116 189 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 CHRNA7P36544 502 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 WNT5AP41221 380 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 PCP4P48539 62 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 VEGFBP49765 207 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 NUFIP2Q7Z417 695 aaKnown RBP8.19□□□□□ -1.1
SYNE1-230ENST00000495090 OR56B2PQ8NGI1 322 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 PSMF1Q92530 271 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 SFRP2Q96HF1 295 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 VAMP8Q9BV40 100 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 FGF23Q9GZV9 251 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-230ENST00000495090 NCOR1P1Q9H4R4 102 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 AURKAIP1Q9NWT8 199 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-230ENST00000495090 A6NNC1 897 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 ZNF716A6NP11 495 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 SYNGR4O95473 234 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 CLDN1O95832 211 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 P0C879 139 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 ADMP35318 185 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 Q0VG73 95 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 MSMO1Q15800 293 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 C20orf204Q6ZNR8 217 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 SYT13Q7L8C5 426 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 ZNF709Q8N972 641 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 OR4B1Q8NGF8 309 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 OR5A2Q8NGI9 324 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 SGMS2Q8NHU3 365 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 GATAD1Q8WUU5 269 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 WFIKKN1Q96NZ8 548 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 HS3ST6Q96QI5 342 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 NPCDR1Q9BY65 106 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 SH2D2AQ9NP31 389 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 CLEC1BQ9P126 229 aa8.19□□□□□ -1.1
SYNE1-230ENST00000495090 MDFIC2A0A1B0GVS7 189 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 C1QTNF9BB2RNN3 333 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 IFNL4K9M1U5 179 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CBR3O75828 277 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 PATE4P0C8F1 98 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CD82P27701 267 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 MPLP40238 635 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CDC34P49427 236 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-230ENST00000495090 LHX2P50458 406 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 GPM6AP51674 278 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 GNB1P62873 340 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CEACAM16Q2WEN9 425 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CST9LP1Q5W188 147 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 OR8G2PQ6IF36 304 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 AAED1Q7RTV5 226 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 FGFRL1Q8N441 504 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CADM4Q8NFZ8 388 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 OR5AU1Q8NGC0 362 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 OR10P1Q8NGE3 313 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 OR1K1Q8NGR3 316 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 FGFBP3Q8TAT2 258 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 KCNE4Q8WWG9 221 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 CIB3Q96Q77 187 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-230ENST00000495090 ALKBH3Q96Q83 286 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-230ENST00000495090 PROK2Q9HC23 129 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 IL36RNQ9UBH0 155 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 TP53TG3Q9ULZ0 132 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 TNRC6AQ8NDV7 1962 aaKnown RBP8.18□□□□□ -1.1
SYNE1-230ENST00000495090 RTTNQ86VV8 2226 aa8.18□□□□□ -1.1
SYNE1-230ENST00000495090 LOC102723996A0A087X1L8 192 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms