RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 S100A16Q96FQ6 103 aaKnown RBP13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ST6GALNAC5Q9BVH7 336 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 PRSS22Q9GZN4 317 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 RDH8Q9NYR8 311 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 PIPOXQ9P0Z9 390 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SIGLEC9Q9Y336 463 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 MOB4Q9Y3A3 225 aa13.01□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 TRBV6-7A0A0A0MS04 114 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 M0QZK8 103 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 RAB29O14966 203 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 XRCC3O43542 346 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SSX5O60225 188 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 OR3A3P47888 321 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 EBI3Q14213 229 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 OR10J5Q8NHC4 309 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 RAB2BQ8WUD1 216 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 MRPL20Q9BYC9 149 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 TOLLIPQ9H0E2 274 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 C11orf54Q9H0W9 315 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 AUNIPQ9H7T9 357 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 COMMD3Q9UBI1 195 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SCOCQ9UIL1 159 aa13□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 IGKV1D-8A0A087WSZ0 117 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 TMBIM6P55061 237 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 BLCAPP62952 87 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 LSAMPQ13449 338 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 HNF4GQ14541 408 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ARSJQ5FYB0 599 aaPredicted RBP12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 MZT2AQ6P582 158 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 C11orf88Q6PI97 169 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 OR2T10Q8NGZ9 312 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 AP3S1Q92572 193 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ABHD14BQ96IU4 210 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 EAF1Q96JC9 268 aaPredicted RBP12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 S1PR3Q99500 378 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 NABP2Q9BQ15 211 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 BCL7BQ9BQE9 202 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 GINS4Q9BRT9 223 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 AGMATQ9BSE5 352 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 GHITMQ9H3K2 345 aa12.99□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ZNF736B4DX44 427 aaPredicted RBP12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 NOL3O60936 208 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 MOSP00540 346 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 EIF4EP06730 217 aaKnown RBP12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ZNF182P17025 639 aaPredicted RBP12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SPCS2Q15005 226 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 RPL39P5Q59GN2 51 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 TMEM69Q5SWH9 247 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 Q6ZS46 218 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 Q8N6K4 173 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 CMTM3Q96MX0 182 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ZNF251Q9BRH9 671 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ZNF221Q9UK13 617 aa12.98□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ANK2Q01484 3957 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 FGF16O43320 207 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 HPGDSO60760 199 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 APOA1P02647 267 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 AMY1AP04745 511 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 AMY2AP04746 511 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 CTXN2P0C2S0 81 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 PTHLHP12272 177 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 CBX5P45973 191 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 GPR12P47775 334 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 TAS2R20P59543 309 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 KRTAP10-3P60369 221 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ABCA11PQ4W5N1 156 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 CNIH2Q6PI25 160 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 C5orf56Q8N8D9 126 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 RNF150Q9ULK6 438 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 STAB1Q9NY15 2570 aa12.97□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SOX6P35712 828 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 VDAC2P45880 294 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SRSF4Q08170 494 aaKnown RBP12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 HOGA1Q86XE5 327 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 H1FOOQ8IZA3 346 aaPredicted RBP12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 KLHDC1Q8N7A1 406 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 GVQW1Q8N7I0 195 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 BEST4Q8NFU0 473 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 CITED1Q99966 193 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SERTAD4Q9NUC0 356 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 ANXA10Q9UJ72 324 aa12.96□□□□□ -0.33
MSH5-SAPCD1-206ENST00000491552 SMIM31A0A1B0GVY4 71 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 SH2D7A6NKC9 451 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 OR8U9P0C7N5 309 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 CT45A6P0DMU7 189 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 CT45A5P0DMU8 189 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 CT45A7P0DMV0 189 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 VSIG10L2P0DP72 767 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 ELK1P19419 428 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 ARPC4P59998 168 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 TMEM95Q3KNT9 176 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 C9orf152Q5JTZ5 239 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 OR8H1Q8NGG4 311 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 OR8U1Q8NH10 309 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 ISOC1Q96CN7 298 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 OR2D2Q9H210 308 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 IFT46Q9NQC8 304 aa12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 RBM7Q9Y580 266 aaKnown RBP12.95□□□□□ -0.34
MSH5-SAPCD1-206ENST00000491552 TENM1Q9UKZ4 2725 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms