RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 DYNLL1P63167 89 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 ACTG1P63261 375 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 GLO1Q04760 184 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 C18orf21Q32NC0 220 aaPredicted RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 SLC35E3Q7Z769 313 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 CNPY4Q8N129 248 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 OR2Y1Q8NGV0 311 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 CCDC124Q96CT7 223 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 TRNT1Q96Q11 434 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 TBX5Q99593 518 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 UGT2B28Q9BY64 529 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 CHST5Q9GZS9 411 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 NXT1Q9UKK6 140 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 RBMX2Q9Y388 322 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 MRPS16Q9Y3D3 137 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 ZNF532Q9HCE3 1301 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 CCDC88CQ9P219 2028 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 MALRD1Q5VYJ5 2156 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 IGKV3D-7A0A0C4DH55 119 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 IGKV3OR2-268A0A0C4DH90 116 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 NDUFS8O00217 210 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 SLC17A3O00476 420 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 GPR171O14626 319 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 UBE2L6O14933 153 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 ZNF705DP0CH99 300 aaPredicted RBP0.62□□□□□ -2.31
VPS50-217ENST00000485140 ZNF705BP0CI00 300 aaPredicted RBP0.62□□□□□ -2.31
VPS50-217ENST00000485140 IDH3GP51553 393 aaPredicted RBP0.62□□□□□ -2.31
VPS50-217ENST00000485140 CARD18P57730 90 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 TMEM258P61165 79 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 FGF12P61328 243 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 EXOC3L4Q17RC7 722 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 AMTNQ6UX39 209 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 NATD1Q8N6N6 113 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 YIPF7Q8N8F6 280 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 CDRT4Q8N9R6 151 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 CCDC112Q8NEF3 446 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 CCDC12Q8WUD4 166 aaPredicted RBP0.62□□□□□ -2.31
VPS50-217ENST00000485140 CCDC127Q96BQ5 260 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 TAMM41Q96BW9 452 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 MSANTD3Q96H12 275 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 RETNLBQ9BQ08 111 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 EIF5A2Q9GZV4 153 aaKnown RBP0.62□□□□□ -2.31
VPS50-217ENST00000485140 MED28Q9H204 178 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 NRBP2Q9NSY0 501 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 GLS2Q9UI32 602 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.62□□□□□ -2.31
VPS50-217ENST00000485140 FAM215AQ9Y5M1 114 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 SNX10Q9Y5X0 201 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 COL6A6A6NMZ7 2263 aa0.62□□□□□ -2.31
VPS50-217ENST00000485140 SLX4Q8IY92 1834 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 DSCAML1Q8TD84 2053 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 RTTNQ86VV8 2226 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 DNMT1P26358 1616 aaKnown RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 ADAMTSL1Q8N6G6 1762 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 DISP1Q96F81 1524 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 TMSB15BA0A087X1C1 80 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 TRGV5A0A0B4J1U4 118 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 A0A1B0GX12 115 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 RFPL4AA6NLU0 287 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 OR5K4A6NMS3 321 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 OR11H12B2RN74 326 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 RFPL4AL1F8VTS6 287 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 CST4P01036 141 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 IGHV1-69P01742 117 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 CD24P25063 80 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 XCL1P47992 114 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 KRTAP10-4P60372 401 aaPredicted RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 FAM3AP98173 230 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 SLC38A11Q08AI6 406 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 RAB31Q13636 194 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 TBC1D28Q2M2D7 210 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 TMEM249Q2WGJ8 235 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 OR10J3Q5JRS4 329 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 TMEM42Q69YG0 159 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 RPS19BP1Q86WX3 136 aaKnown RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 LRRC28Q86X40 367 aaPredicted RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 SLC13A5Q86YT5 568 aaPredicted RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 TMEM75Q8N9X5 138 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 OR2D3Q8NGH3 330 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 OR11H2Q8NH07 326 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 PRRG3Q9BZD7 231 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 NKX6-2Q9C056 277 aaPredicted RBP0.61□□□□□ -2.31
VPS50-217ENST00000485140 UBQLN4Q9NRR5 601 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 MAT2BQ9NZL9 334 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 HHLA3Q9XRX5 114 aa0.61□□□□□ -2.31
VPS50-217ENST00000485140 ZFHX2Q9C0A1 2572 aaPredicted RBP0.6□□□□□ -2.31
VPS50-217ENST00000485140 IGKV3-7A0A075B6H7 116 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 A0A1W2PQD3 144 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 A8MUN3 132 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 SULT1C2O00338 296 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 FADS2O95864 444 aaKnown RBP0.6□□□□□ -2.31
VPS50-217ENST00000485140 IGLV3-27P01718 113 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 APOA1P02647 267 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 ZNF728P0DKX0 622 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 AGTR1P30556 359 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 CCR7P32248 378 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 AKR1C3P42330 323 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 SERPINB10P48595 397 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 BTN3A2P78410 334 aa0.6□□□□□ -2.31
VPS50-217ENST00000485140 GNA12Q03113 381 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms