RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PITPNAQ00169 270 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 LSAMPQ13449 338 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 HIST2H2BDQ6DRA6 164 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 ZNF833PQ6ZTB9 187 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 ODF3L1Q8IXM7 274 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 FAM110DQ8TAY7 271 aaPredicted RBP11.3□□□□□ -0.6
VAMP4-203ENST00000474047 ABHD14BQ96IU4 210 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 GINS4Q9BRT9 223 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 ST6GALNAC5Q9BVH7 336 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 IFI27L2Q9H2X8 130 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 MMP27Q9H306 513 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 RDH8Q9NYR8 311 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 RNF150Q9ULK6 438 aa11.3□□□□□ -0.6
VAMP4-203ENST00000474047 ITGB1BP1O14713 200 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 TMEM127O75204 238 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 GSTP1P09211 210 aaKnown RBP11.29□□□□□ -0.6
VAMP4-203ENST00000474047 GSTT2P0CG29 244 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 GSTT2BP0CG30 244 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 GPR12P47775 334 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 RPL39P5Q59GN2 51 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 FAM71F2Q6NXP2 309 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 SLC35E3Q7Z769 313 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 FOXRED2Q8IWF2 684 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 OR4X2Q8NGF9 303 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 OR8H1Q8NGG4 311 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 NABP2Q9BQ15 211 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 ZNF251Q9BRH9 671 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 PARP12Q9H0J9 701 aaKnown RBP11.29□□□□□ -0.6
VAMP4-203ENST00000474047 DIABLOQ9NR28 239 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 RBM7Q9Y580 266 aaKnown RBP11.29□□□□□ -0.6
VAMP4-203ENST00000474047 TGFBR1P36897 503 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 IGSF11Q5DX21 431 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 HACD4Q5VWC8 232 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 Q8N6K4 173 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 OR5H6Q8NGV6 325 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 FUNDC2Q9BWH2 189 aa11.29□□□□□ -0.6
VAMP4-203ENST00000474047 LIN7CQ9NUP9 197 aaKnown RBP11.29□□□□□ -0.6
VAMP4-203ENST00000474047 TRAV18A0A075B6X5 111 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 IGKV1-6A0A0C4DH72 117 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 PSMB11A5LHX3 300 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 TMEM235A6NFC5 223 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 TRIM64CA6NLI5 447 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 H7C2Y5 167 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 TSPAN15O95858 294 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 DTYMKP23919 212 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 RPS19P39019 145 aaKnown RBP11.28□□□□□ -0.6
VAMP4-203ENST00000474047 MMDQ15546 238 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 KHDC1LQ5JSQ8 128 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 NDUFA11Q86Y39 141 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 CITED2Q99967 270 aaPredicted RBP11.28□□□□□ -0.6
VAMP4-203ENST00000474047 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.28□□□□□ -0.6
VAMP4-203ENST00000474047 ELF5Q9UKW6 265 aaPredicted RBP11.28□□□□□ -0.6
VAMP4-203ENST00000474047 SPATA2Q9UM82 520 aa11.28□□□□□ -0.6
VAMP4-203ENST00000474047 A0A1W2PRX2 142 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 TCRBV4S1A1TA0A5B7 111 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 OPN1MWP04001 364 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 OPN1MW2P0DN77 364 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 OPN1MW3P0DN78 364 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 MC5RP33032 325 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 F2RL1P55085 397 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 ACTBP60709 375 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 SLC35B1P78383 322 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 SRSF7Q16629 238 aaKnown RBP eCLIP11.27□□□□□ -0.61
VAMP4-203ENST00000474047 PNLIPRP3Q17RR3 467 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 Q8N9W7 124 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 CHPT1Q8WUD6 406 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 NUDCD2Q8WVJ2 157 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 RBMXL1Q96E39 390 aaKnown RBP11.27□□□□□ -0.61
VAMP4-203ENST00000474047 KIAA1456Q9P272 454 aa11.27□□□□□ -0.61
VAMP4-203ENST00000474047 A0A0A6YYH2 397 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 A6NJ64 397 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 KCNAB3O43448 404 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 IGHG2P01859 326 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 OR8U9P0C7N5 309 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 SOX6P35712 828 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 ZNF260Q3ZCT1 412 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 FAM131AQ6UXB0 335 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 GLDNQ6ZMI3 551 aaPredicted RBP11.26□□□□□ -0.61
VAMP4-203ENST00000474047 OR13F1Q8NGS4 319 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 OR8U1Q8NH10 309 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 S100A16Q96FQ6 103 aaKnown RBP11.26□□□□□ -0.61
VAMP4-203ENST00000474047 NOL4LQ96MY1 436 aaPredicted RBP11.26□□□□□ -0.61
VAMP4-203ENST00000474047 AGMATQ9BSE5 352 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 CABLES2Q9BTV7 478 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 ABCG5Q9H222 651 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 DCSTAMPQ9H295 470 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 PLSCR3Q9NRY6 295 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 LINC00527Q9UJ94 153 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 TRBV6-7A0A0A0MS04 114 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 OR5H14A6NHG9 310 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 AP4M1O00189 453 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 DIRAS3O95661 229 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 CTXN2P0C2S0 81 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 CT45A6P0DMU7 189 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 CT45A5P0DMU8 189 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 CT45A7P0DMV0 189 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 VBP1P61758 197 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 Q6ZS49 121 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 ZNF329Q86UD4 541 aa11.26□□□□□ -0.61
VAMP4-203ENST00000474047 DRAXINQ8NBI3 349 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms