RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ABHD14BQ96IU4 210 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 ZNF471Q9BX82 626 aaPredicted RBP1.25□□□□□ -2.21
USP40-209ENST00000452724 SNX12Q9UMY4 172 aa1.25□□□□□ -2.21
USP40-209ENST00000452724 RTEL1-TNFRSF6BF6WH68 1400 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 CLUHO75153 1309 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 ARHGAP32A7KAX9 2087 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 DSCAML1Q8TD84 2053 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 IGLV3-9A0A075B6K5 115 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 GRIFINA4D1Z8 144 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 IQCF5A8MTL0 148 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 F8VZ95 297 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 MKRN2OSH3BPM6 223 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 SCN2BO60939 215 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 BRI3O95415 125 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 ASS1P00966 412 aaKnown RBP1.24□□□□□ -2.21
USP40-209ENST00000452724 KDELR2P33947 212 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 OPRM1P35372 400 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 HINT1P49773 126 aaPredicted RBP1.24□□□□□ -2.21
USP40-209ENST00000452724 STC1P52823 247 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 DLX6P56179 175 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 XRCC4Q13426 336 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 AGTRAPQ6RW13 159 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 SPATA24Q86W54 205 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 SLC13A5Q86YT5 568 aaPredicted RBP1.24□□□□□ -2.21
USP40-209ENST00000452724 OR5AK3PQ8NH89 298 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 FNDC9Q8TBE3 224 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 MED28Q9H204 178 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 ASCL3Q9NQ33 180 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 CD300AQ9UGN4 299 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 GLS2Q9UI32 602 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 HHLA2Q9UM44 414 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 AMMECR1Q9Y4X0 333 aaPredicted RBP1.24□□□□□ -2.21
USP40-209ENST00000452724 SNX10Q9Y5X0 201 aa1.24□□□□□ -2.21
USP40-209ENST00000452724 MDC1Q14676 2089 aaKnown RBP1.24□□□□□ -2.21
USP40-209ENST00000452724 PLCH2O75038 1416 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 ERICH2A1L162 156 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 C11orf86A6NJI1 115 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 ZW10O43264 779 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 OR13C7P0DN81 318 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 NPPCP23582 126 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 CRHBPP24387 322 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 ADORA1P30542 326 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 AGTR1P30556 359 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 CASQ1P31415 396 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 LINC00313P59037 77 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 TPRXLQ17RH7 258 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 CLEC12BQ2HXU8 276 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 N4BP2L1Q5TBK1 243 aaPredicted RBP1.23□□□□□ -2.21
USP40-209ENST00000452724 Q6ZSA8 131 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 GLT6D1Q7Z4J2 308 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 PLCZ1Q86YW0 608 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 SELENOHQ8IZQ5 122 aaKnown RBP1.23□□□□□ -2.21
USP40-209ENST00000452724 ZNF283Q8N7M2 679 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 ACY3Q96HD9 319 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 UBQLN4Q9NRR5 601 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 C1orf109Q9NX04 203 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 MS4A12Q9NXJ0 267 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 GMEB1Q9Y692 573 aa1.23□□□□□ -2.21
USP40-209ENST00000452724 LRPPRCP42704 1394 aaKnown RBP1.22□□□□□ -2.21
USP40-209ENST00000452724 IGHV3-15A0A0B4J1V0 119 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 ARRDC5A6NEK1 342 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 TMEM235A6NFC5 223 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 GNRH2O43555 120 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 ARL6IP5O75915 188 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 IGLV3-27P01718 113 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 GPX1P07203 203 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CD7P09564 240 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 PVALBP20472 110 aaPredicted RBP1.22□□□□□ -2.21
USP40-209ENST00000452724 PEBP1P30086 187 aaKnown RBP1.22□□□□□ -2.21
USP40-209ENST00000452724 SLAMF1Q13291 335 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.22□□□□□ -2.21
USP40-209ENST00000452724 C2orf91Q6ZV80 131 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CRLF3Q8IUI8 442 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 SLC35F6Q8N357 371 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CCDC112Q8NEF3 446 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 OR52E4Q8NGH9 312 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 SMIM12Q96EX1 92 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 PRO2289Q9P1D8 64 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CFAP45Q9UL16 551 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.22□□□□□ -2.21
USP40-209ENST00000452724 NCKAP5O14513 1909 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 CR1P17927 2039 aa1.22□□□□□ -2.21
USP40-209ENST00000452724 TMEM94Q12767 1356 aa1.21□□□□□ -2.21
USP40-209ENST00000452724 IGKV2-29A2NJV5 120 aaPredicted RBP1.21□□□□□ -2.22
USP40-209ENST00000452724 J3QQQ9 107 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 TOX3O15405 576 aaPredicted RBP1.21□□□□□ -2.22
USP40-209ENST00000452724 CCL3P10147 92 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 HSPA9P38646 679 aaKnown RBP1.21□□□□□ -2.22
USP40-209ENST00000452724 CD151P48509 253 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 RPL26P61254 145 aaKnown RBP1.21□□□□□ -2.22
USP40-209ENST00000452724 PMS2P3Q13401 168 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 FAM45BPQ6NSW5 357 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 SCGB1D4Q6XE38 83 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 NATD1Q8N6N6 113 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 LFNGQ8NES3 379 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 ATP6V1C2Q8NEY4 427 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 OR5L1Q8NGL2 311 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 ZNF563Q8TA94 476 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 STOML3Q8TAV4 291 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 FGF13Q92913 245 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms