RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 CXCL1P09341 107 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 RPS10P46783 165 aaKnown RBP12.06□□□□□ -0.48
LIG1-202ENST00000427526 ERVFRD-1P60508 538 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 ZNF726P1Q15940 193 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 P4HA3Q7Z4N8 544 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 MEGF10Q96KG7 1140 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 VSIRQ9H7M9 311 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 SIRT7Q9NRC8 400 aa12.06□□□□□ -0.48
LIG1-202ENST00000427526 MBNL3Q9NUK0 354 aaKnown RBP12.06□□□□□ -0.48
LIG1-202ENST00000427526 GLIPR1P48060 266 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 FBXW9Q5XUX1 488 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 SCCPDHQ8NBX0 429 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 MBD3L1Q8WWY6 194 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 PSMG3Q9BT73 122 aaPredicted RBP12.05□□□□□ -0.48
LIG1-202ENST00000427526 ZDHHC11Q9H8X9 412 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 PSENENQ9NZ42 101 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 METTL15P1P0C7V9 234 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 FAM90A2PQ658T7 463 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 PRR18Q8N4B5 295 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 RNASE11Q8TAA1 199 aaKnown RBP12.05□□□□□ -0.48
LIG1-202ENST00000427526 CISD1Q9NZ45 108 aaKnown RBP12.05□□□□□ -0.48
LIG1-202ENST00000427526 WIPI2Q9Y4P8 454 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 SIRPB1O00241 398 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 IAPPP10997 89 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 HOXA5P20719 270 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 CD200P41217 278 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 LRRC75BQ2VPJ9 315 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 NCMAPQ5T1S8 102 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 SLC25A24Q6NUK1 477 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 MYPOPQ86VE0 399 aaPredicted RBP12.05□□□□□ -0.48
LIG1-202ENST00000427526 RTL8AQ9BWD3 113 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 GNG13Q9P2W3 67 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 TRAPPC2LQ9UL33 140 aa12.05□□□□□ -0.48
LIG1-202ENST00000427526 ZNF146Q15072 292 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 DEFB109BQ30KR1 87 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 ACSF3Q4G176 576 aaPredicted RBP12.04□□□□□ -0.48
LIG1-202ENST00000427526 SSX7Q7RTT5 188 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 Q8IYB0 196 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 SCGB1C1Q8TD33 95 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 TMPRSS5Q9H3S3 457 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 KIAA0141Q14154 515 aaPredicted RBP12.04□□□□□ -0.48
LIG1-202ENST00000427526 MED12LQ86YW9 2145 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 DOCK7Q96N67 2140 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 LIN7CQ9NUP9 197 aaKnown RBP12.04□□□□□ -0.48
LIG1-202ENST00000427526 OR14J1Q9UGF5 321 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 RNF150Q9ULK6 438 aa12.04□□□□□ -0.48
LIG1-202ENST00000427526 B4DEV8 164 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 TCAPO15273 167 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 SERF2P84101 59 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 DRAM1Q8N682 238 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 NANOS1Q8WY41 292 aaKnown RBP12.03□□□□□ -0.48
LIG1-202ENST00000427526 PARD6GQ9BYG4 376 aaPredicted RBP12.03□□□□□ -0.48
LIG1-202ENST00000427526 IFITM10A6NMD0 228 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 J3QW42 95 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 PGA5P0DJD9 388 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 BCL2P10415 239 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 CEACAM6P40199 344 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 UBALD1Q8TB05 177 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 ZNF665Q9H7R5 613 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 POLDIP2Q9Y2S7 368 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 URGCP-MRPS24S4R325 110 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 TGIF2-C20orf24A0A0A6YYL0 155 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 WDR1O75083 606 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 HBG1P69891 147 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 HBG2P69892 147 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 TBC1D28Q2M2D7 210 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 ZNF787Q6DD87 383 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 FGFRL1Q8N441 504 aa12.03□□□□□ -0.48
LIG1-202ENST00000427526 RCC1LQ96I51 464 aaKnown RBP12.03□□□□□ -0.48
LIG1-202ENST00000427526 CDIPTO14735 213 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 SMPD2O60906 423 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 CELA3BP08861 270 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 ZNF16P17020 682 aaPredicted RBP12.02□□□□□ -0.49
LIG1-202ENST00000427526 RAB11AP62491 216 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 SVIPQ8NHG7 77 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 OR2J1Q9GZK6 312 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 WDR61Q9GZS3 305 aaKnown RBP12.02□□□□□ -0.49
LIG1-202ENST00000427526 KCNS2Q9ULS6 477 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 RBM7Q9Y580 266 aaKnown RBP12.02□□□□□ -0.49
LIG1-202ENST00000427526 ZFP92A6NM28 416 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 YIF1AO95070 293 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 CDX1P47902 265 aaPredicted RBP12.02□□□□□ -0.49
LIG1-202ENST00000427526 LCN15Q6UWW0 184 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 OR4C12Q96R67 309 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 TMEM242Q9NWH2 141 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 DOK5Q9P104 306 aa12.02□□□□□ -0.49
LIG1-202ENST00000427526 RAB4BP61018 213 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 PPP1CBP62140 327 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 ALKBH6Q3KRA9 238 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 ZNF610Q8N9Z0 462 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 MUC6Q6W4X9 2439 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 FAM90A26D6RGX4 464 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 SH2D1BO14796 132 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 TM4SF5O14894 197 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 FGF8P55075 233 aaPredicted RBP12.01□□□□□ -0.49
LIG1-202ENST00000427526 ERVS71-1P61550 626 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 RPP30P78346 268 aaKnown RBP12.01□□□□□ -0.49
LIG1-202ENST00000427526 PNRC1Q12796 327 aaPredicted RBP12.01□□□□□ -0.49
LIG1-202ENST00000427526 ZNF674Q2M3X9 581 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 SPANXN5Q5MJ07 72 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms