RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CHIAQ9BZP6 476 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 TOLLIPQ9H0E2 274 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 LIME1Q9H400 295 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 NARFLQ9H6Q4 476 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 RAB18Q9NP72 206 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 CCL28Q9NRJ3 127 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 PSG11Q9UQ72 335 aa4.93□□□□□ -1.62
HMGB3-202ENST00000419110 MALRD1Q5VYJ5 2156 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 WNK2Q9Y3S1 2297 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 C3orf85A0A1B0GTC6 90 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 C5orf51A6NDU8 294 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 OVOL3O00110 214 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 MPPED1O15442 326 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 TNFSF12O43508 249 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ENSAO43768 121 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ATG12O94817 140 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 CLDN1O95832 211 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 IGHV4-39P01824 125 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 SERPINE2P07093 398 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 LIPFP07098 398 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 WNT2P09544 360 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 CCL3L1P16619 93 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ZNF16P17020 682 aaPredicted RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 CXCL3P19876 107 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 OMGP23515 440 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 DNASE1P24855 282 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 COL8A2P25067 703 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 UCP1P25874 307 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 KIR2DS2P43631 304 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 GNG10P50151 68 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 AKR1C2P52895 323 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ATP5J2P56134 94 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 CYCSP99999 105 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 CD300CQ08708 224 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 FGL1Q08830 312 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 C17orf58Q2M2W7 97 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 C11orf91Q3C1V1 193 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 LY6G6FQ5SQ64 297 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 WDR25Q64LD2 544 aaPredicted RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 LYPD2Q6UXB3 125 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 HEPN1Q6WQI6 88 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ZNF66Q6ZN08 573 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ZNF695Q8IW36 515 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 DRAM1Q8N682 238 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ZNF525Q8N782 197 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 TCTEX1D1Q8N7M0 179 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 RFESDQ8TAC1 157 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 C8orf46Q8TAG6 207 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 TCTEX1D2Q8WW35 142 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 RBPMSQ93062 196 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 IL22RA2Q969J5 263 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ADTRPQ96IZ2 230 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 HSD17B10Q99714 261 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 PARP12Q9H0J9 701 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 TMEM222Q9H0R3 208 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 IFI27L2Q9H2X8 130 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 RANBP3Q9H6Z4 567 aaPredicted RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 METTL8Q9H825 291 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 PLEKHF2Q9H8W4 249 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 LINC00574Q9H8X3 128 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 PATZ1Q9HBE1 687 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 ONECUT1Q9UBC0 465 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 RPUSD1Q9UJJ7 312 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 RALYQ9UKM9 306 aaKnown RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 AMMECR1Q9Y4X0 333 aaPredicted RBP4.92□□□□□ -1.62
HMGB3-202ENST00000419110 SESN1Q9Y6P5 492 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 PTPN13Q12923 2485 aa4.92□□□□□ -1.62
HMGB3-202ENST00000419110 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.91□□□□□ -1.623e-8■■■■■ 32.7
HMGB3-202ENST00000419110 USP9YO00507 2555 aaPredicted RBP4.91□□□□□ -1.62
HMGB3-202ENST00000419110 FXYD6-FXYD2A0A087WZ82 144 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 SAA2-SAA4A0A096LPE2 208 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 DBX1A6NMT0 343 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 A8MXK9 166 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 M0R1X1 148 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 IGHV2-5P01817 119 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 APOA2P02652 100 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 HOXB5P09067 269 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 SAA2P0DJI9 122 aaPredicted RBP4.91□□□□□ -1.62
HMGB3-202ENST00000419110 RPA2P15927 270 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 C4BPBP20851 252 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 F2RP25116 425 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 GNRHRP30968 328 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 THBS3P49746 956 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 LOXL3P58215 753 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 DSCR9P59020 149 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 ERVFRD-1P60508 538 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 S100A10P60903 97 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 ERVK-16P61578 105 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 SRSF1Q07955 248 aaKnown RBP eCLIP4.91□□□□□ -1.62
HMGB3-202ENST00000419110 TMEM187Q14656 261 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 SMCO1Q147U7 214 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 ANKRD55Q3KP44 614 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 MORN2Q502X0 79 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 TMEM268Q5VZI3 342 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 FAM71F2Q6NXP2 309 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 C5orf24Q7Z6I8 188 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 NOXA1Q86UR1 476 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 LDLRAD3Q86YD5 345 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 FGFRL1Q8N441 504 aa4.91□□□□□ -1.62
HMGB3-202ENST00000419110 KIR3DL3Q8N743 410 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms