RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 OR2F1Q13607 317 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TMEM31Q5JXX7 168 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 C10orf91Q5T1B1 145 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 BCL2L15Q5TBC7 163 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 LPCAT3Q6P1A2 487 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 CASP12Q6UXS9 341 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 ASCL4Q6XD76 172 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 Q6ZR03 302 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 NDUFAF7Q7L592 441 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 SMIM15Q7Z3B0 74 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 DAW1Q8N136 415 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 FAM58AQ8N1B3 248 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 ZNF283Q8N7M2 679 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 WDR31Q8NA23 367 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR4K5Q8NGD3 323 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR9I1Q8NGQ6 314 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR1J4Q8NGS1 313 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR10K1Q8NGX5 313 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR6N1Q8NGY5 312 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR2L8Q8NGY9 312 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 OR10A6Q8NH74 314 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 STOML3Q8TAV4 291 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TFGQ92734 400 aaPredicted RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 ARL11Q969Q4 196 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 S100PBPQ96BU1 408 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 MALSU1Q96EH3 234 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 SMARCD1Q96GM5 515 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 ZNF488Q96MN9 340 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TEAD3Q99594 435 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 PKMYT1Q99640 499 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TM6SF2Q9BZW4 377 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 DPY30Q9C005 99 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 ZNF430Q9H8G1 570 aaPredicted RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 TXNL4BQ9NX01 149 aaKnown RBP2.88□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R13Q9NYV9 303 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R8Q9NYW2 309 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 TAS2R5Q9NYW4 299 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 VAPAQ9P0L0 249 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 ABRACLQ9P1F3 81 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 COMMD3Q9UBI1 195 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 CES1P1Q9UKY3 287 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 HES2Q9Y543 173 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 RREB1Q92766 1687 aa2.88□□□□□ -1.95
VPS54-204ENST00000416400 KDM3BQ7LBC6 1761 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ATAD5Q96QE3 1844 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 GNG14A0A1W2PPG7 69 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 C9orf170A2RU37 121 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 LRRN3E7EW58 273 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 MKRN2OSH3BPM6 223 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SMLR1H3BR10 107 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 BPY2O14599 106 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ITGB1BP1O14713 200 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 RBFOX2O43251 390 aaKnown RBP eCLIP2.87□□□□□ -1.95
VPS54-204ENST00000416400 GSTZ1O43708 216 aaPredicted RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 CTNSO60931 367 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 GATBO75879 557 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 NSA2O95478 260 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 RAB36O95755 333 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ZNF682O95780 498 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 PTHP01270 115 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 GCGP01275 180 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 IL3P08700 152 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 LINC00032P0C843 101 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 DDTP30046 118 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CD70P32970 193 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 IFNGR2P38484 337 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 KCNJ3P48549 501 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 XKP51811 444 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 PAFAH1B2P68402 229 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CRADDP78560 199 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 FABP9Q0Z7S8 132 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ZNF345Q14585 488 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 RHEBQ15382 184 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ZNHIT3Q15649 155 aaPredicted RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 USF2Q15853 346 aaPredicted RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 MPV17L2Q567V2 206 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 FBXW9Q5XUX1 488 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CD200R1LQ6Q8B3 271 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CD300LGQ6UXG3 332 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SLC16A13Q7RTY0 426 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 WDR86Q86TI4 376 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CALHM3Q86XJ0 350 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 LGI3Q8N145 548 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 ZNF567Q8N184 647 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 STK40Q8N2I9 435 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 GATSQ8NAP1 163 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 OR6K6Q8NGW6 343 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 OR1S1Q8NH92 325 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 JOSD2Q8TAC2 188 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 GNPDA2Q8TDQ7 276 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 DTD1Q8TEA8 209 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 LCN9Q8WX39 176 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 OR8D1Q8WZ84 308 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 OR52E6Q96RD3 313 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 CMSS1Q9BQ75 279 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 TMEM243Q9BU79 118 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 DOHHQ9BU89 302 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SNRNP25Q9BV90 132 aaKnown RBP2.87□□□□□ -1.95
VPS54-204ENST00000416400 GGACTQ9BVM4 153 aa2.87□□□□□ -1.95
VPS54-204ENST00000416400 SAMD10Q9BYL1 202 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms