RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NECAP2Q9NVZ3 263 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 GHRLQ9UBU3 117 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 AK3Q9UIJ7 227 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 ZDHHC8Q9ULC8 765 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 COLCA2A8K830 154 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 TSPAN15O95858 294 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 SNCAP37840 140 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 AKR1E2Q96JD6 320 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 NMES1Q9C002 83 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 ATMQ13315 3056 aa8.72□□□□□ -1.01
COL6A3-205ENST00000392004 SETXQ7Z333 2677 aaKnown RBP8.71□□□□□ -1.01
COL6A3-205ENST00000392004 ST8SIA5O15466 376 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 DEFA4P12838 97 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 NQO2P16083 231 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 PDLIM4P50479 330 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 ADIPOQQ15848 244 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 PNLIPRP3Q17RR3 467 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 ADAD2Q8NCV1 583 aaKnown RBP8.71□□□□□ -1.01
COL6A3-205ENST00000392004 FAM222BQ8WU58 562 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 PINX1Q96BK5 328 aaKnown RBP8.71□□□□□ -1.01
COL6A3-205ENST00000392004 RIMS4Q9H426 269 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-205ENST00000392004 C19orf84I3L1E1 186 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 IGHV1-46P01743 117 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 PRH1P02810 166 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 FOLR2P14207 255 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 S100A2P29034 98 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 RAB5CP51148 216 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 TDGF1P3P51864 188 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 DEFA6Q01524 100 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 ZNF672Q499Z4 452 aaPredicted RBP8.71□□□□□ -1.01
COL6A3-205ENST00000392004 STUMQ69YW2 141 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 C22orf34Q6ZV56 151 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 CBLN4Q9NTU7 201 aa8.71□□□□□ -1.01
COL6A3-205ENST00000392004 RNF223E7ERA6 249 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 MFNGO00587 321 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 PRSS54Q6PEW0 395 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 BIVMQ86UB2 503 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 CCDC71LQ8N9Z2 235 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 KDF1Q8NAX2 398 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-205ENST00000392004 CD300LFQ8TDQ1 290 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 HIST1H2BAQ96A08 127 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 ABHD14BQ96IU4 210 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 C1QTNF5Q9BXJ0 243 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 EIF5A2Q9GZV4 153 aaKnown RBP8.71□□□□□ -1.02
COL6A3-205ENST00000392004 SLC2A8Q9NY64 477 aa8.71□□□□□ -1.02
COL6A3-205ENST00000392004 C5orf52A6NGY3 159 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 UBE2CO00762 179 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 FCGR3BO75015 233 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 CCL3L1P16619 93 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 COL8A2P25067 703 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 SSTR5P35346 364 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 DVL1P1P54792 670 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 CATR1Q13166 79 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 PRAMEF5Q5TYX0 476 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 OR52L2PQ8NGH6 319 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 RNF166Q96A37 237 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 DIRC2Q96SL1 478 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 OR2D2Q9H210 308 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ANKRD17O75179 2603 aaKnown RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 DSCAMO60469 2012 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ASPMQ8IZT6 3477 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 TAAR5O14804 337 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 TBPP20226 339 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 RAB6AP20340 208 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 CDSNQ15517 529 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 GPR157Q5UAW9 335 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ITLN2Q8WWU7 325 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 BPESC1Q9GZL8 116 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 C7orf69Q9H7B7 122 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 DMDP11532 3685 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 TRBV23-1A0A0A0MS06 115 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 PPIAL4CA0A0B4J2A2 164 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 SOD3P08294 240 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 PPIAL4GP0DN37 164 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 COX5BP10606 129 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 IL3RAP26951 378 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ERVFRD-1P60508 538 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 TMEM128Q5BJH2 165 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 Q6ZRG5 221 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 C5orf24Q7Z6I8 188 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 MARS2Q96GW9 593 aaKnown RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 TMPRSS5Q9H3S3 457 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 MTCH1Q9NZJ7 389 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 METTL1Q9UBP6 276 aaKnown RBP8.7□□□□□ -1.02
COL6A3-205ENST00000392004 POMT1Q9Y6A1 747 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ARHGAP32A7KAX9 2087 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 H7C1Q1 480 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 APOA2P02652 100 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 OR2B8PP59922 312 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 ZNF616Q08AN1 781 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 OR5P3Q8WZ94 311 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 RSRP1Q9BUV0 290 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 PECRQ9BY49 303 aa8.7□□□□□ -1.02
COL6A3-205ENST00000392004 IGSF10Q6WRI0 2623 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 IGKV1-9A0A0C4DH69 117 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 OOEPA6NGQ2 149 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 H3BP45 60 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 AP4M1O00189 453 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 RD3LP0DJH9 198 aa8.69□□□□□ -1.02
COL6A3-205ENST00000392004 BTF3P20290 206 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms