RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 CD177Q8N6Q3 437 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 PLPPR1Q8TBJ4 325 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 EGLN1Q9GZT9 426 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 SAP30LQ9HAJ7 183 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 KCNIP3Q9Y2W7 256 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 WIPI2Q9Y4P8 454 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 POMT1Q9Y6A1 747 aa12.7□□□□□ -0.38
VRK3-218ENST00000600031 MYO18BQ8IUG5 2567 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 COL10A1Q03692 680 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 TMEM268Q5VZI3 342 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 C5orf24Q7Z6I8 188 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 MRPL30Q8TCC3 161 aaKnown RBP12.69□□□□□ -0.38
VRK3-218ENST00000600031 PLEKHA2Q9HB19 425 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 Q9N2K0 584 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 PARP11Q9NR21 331 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 NECAP2Q9NVZ3 263 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 MLXQ9UH92 298 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 KLF2Q9Y5W3 355 aaPredicted RBP12.69□□□□□ -0.38
VRK3-218ENST00000600031 DOPEY1Q5JWR5 2465 aa12.69□□□□□ -0.38
VRK3-218ENST00000600031 IGKV1D-17A0A075B6S4 117 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 OR5H8P0DN80 308 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 PRDX2P32119 198 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 GGNBP1Q5YKI7 109 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 TMEM88Q6PEY1 159 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 DHRS11Q6UWP2 260 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 FAM90A1Q86YD7 464 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 OR11L1Q8NGX0 322 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 RNASEK-C17orf49H0YIS7 233 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 IFNL4K9M1U5 179 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 MED6O75586 246 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 HEXAP06865 529 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 FCGR2CP31995 323 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 SHEQ5VZ18 495 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 BTNL8Q6UX41 500 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 TMEM231Q9H6L2 316 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 ZNF286AQ9HBT8 521 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 ZFP57Q9NU63 452 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 COL12A1Q99715 3063 aa12.68□□□□□ -0.38
VRK3-218ENST00000600031 IRF2P14316 349 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 MUC1P15941 1255 aaPredicted RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 LPAR6P43657 344 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 GABRA2P47869 451 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 F2RL1P55085 397 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 SRSF1Q07955 248 aaKnown RBP eCLIP12.67□□□□□ -0.38
VRK3-218ENST00000600031 MEX3BQ6ZN04 569 aaKnown RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 ZNF497Q6ZNH5 498 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 FOXRED2Q8IWF2 684 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 LINC00518Q8N0U6 118 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 GALNT14Q96FL9 552 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 RIMS4Q9H426 269 aaPredicted RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 SPTAN1Q13813 2472 aaKnown RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 DSCAMO60469 2012 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 TRBV6-6A0A0A6YYG2 114 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 MDH2P40926 338 aaKnown RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 OR3A1P47881 315 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 SRSF7Q16629 238 aaKnown RBP eCLIP12.67□□□□□ -0.38
VRK3-218ENST00000600031 ZNF880Q6PDB4 577 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 Q6ZS49 121 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 CBLN2Q8IUK8 224 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 SAV1Q9H4B6 383 aaPredicted RBP12.67□□□□□ -0.38
VRK3-218ENST00000600031 FBXL17Q9UF56 701 aa12.67□□□□□ -0.38
VRK3-218ENST00000600031 TRAV39A0A0B4J263 110 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 FBXO24O75426 580 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 CD5P06127 495 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 SOD3P08294 240 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 ZNF728P0DKX0 622 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 RCC1P18754 421 aaPredicted RBP12.66□□□□□ -0.38
VRK3-218ENST00000600031 NPBWR1P48145 328 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 PIGPP57054 158 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 GAPTQ8N292 157 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 DEFB108BQ8NET1 73 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 CCL17Q92583 94 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 SUCNR1Q9BXA5 334 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 NAA60Q9H7X0 242 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 CBLN4Q9NTU7 201 aa12.66□□□□□ -0.38
VRK3-218ENST00000600031 LRRC30A6NM36 301 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 E5RGE8 158 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 ZNF737O75373 536 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 SCTP09683 121 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 AESQ08117 197 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 ABCA11PQ4W5N1 156 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 C11orf71Q6IPW1 123 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 LRTM2Q8N967 370 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 UBAC2Q8NBM4 344 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 LIME1Q9H400 295 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 SEBOXQ9HB31 216 aaPredicted RBP12.65□□□□□ -0.38
VRK3-218ENST00000600031 TMEM106BQ9NUM4 274 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 NSG2Q9Y328 171 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 FAM96BQ9Y3D0 163 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 LSM5Q9Y4Y9 91 aaKnown RBP12.65□□□□□ -0.38
VRK3-218ENST00000600031 CHD6Q8TD26 2715 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 A6NNC1 897 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 TMEM178BH3BS89 294 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 UBR5O95071 2799 aaPredicted RBP12.65□□□□□ -0.38
VRK3-218ENST00000600031 DANCRP0C864 163 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 HOXA1P49639 335 aaPredicted RBP12.65□□□□□ -0.38
VRK3-218ENST00000600031 PPOXP50336 477 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 DVL1P1P54792 670 aaPredicted RBP12.65□□□□□ -0.38
VRK3-218ENST00000600031 TMEM33P57088 247 aa12.65□□□□□ -0.38
VRK3-218ENST00000600031 TMEM187Q14656 261 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms