RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CEACAM6P40199 344 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 OR3A3P47888 321 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 RORCP51449 518 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF137PP52743 207 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 TMBIM6P55061 237 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF816Q0VGE8 651 aaPredicted RBP11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 LY6G6FQ5SQ64 297 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 SPATA3Q8NHX4 192 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 RPEQ96AT9 228 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 CREB3L1Q96BA8 519 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 KCTD12Q96CX2 325 aaKnown RBP11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF251Q9BRH9 671 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 AGMATQ9BSE5 352 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ST6GALNAC5Q9BVH7 336 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 C11orf54Q9H0W9 315 aaPredicted RBP11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 IFI27L2Q9H2X8 130 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 RAB9BQ9NP90 201 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ABCB10Q9NRK6 738 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 SLC23A1Q9UHI7 598 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 SIGLEC9Q9Y336 463 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 AMMECR1Q9Y4X0 333 aaPredicted RBP11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 IGHV1-3A0A0C4DH29 117 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 HSD17B6O14756 317 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 XRCC3O43542 346 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 NDUFA7O95182 113 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 ELK1P19419 428 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 DTYMKP23919 212 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 RAG2P55895 527 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 KRTAP10-3P60369 221 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 PNLIPRP3Q17RR3 467 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 UBE2NLQ5JXB2 153 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 STEAP3Q658P3 488 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 Q6ZS49 121 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 LYG1Q8N1E2 194 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 GVQW1Q8N7I0 195 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 OR4A4PQ8NGN8 299 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 OR56B4Q8NH76 319 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 LINC01006Q8NI28 216 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 DYNC2LI1Q8TCX1 351 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 RTN4IP1Q8WWV3 396 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 CABLES2Q9BTV7 478 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 ABHD14AQ9BUJ0 271 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 SCOCQ9UIL1 159 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 MGAT4AQ9UM21 535 aa11.37□□□□□ -0.59
SHKBP1-217ENST00000598558 TRBV6-7A0A0A0MS04 114 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 A0A0A6YYH2 397 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 A6NJ64 397 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 H3BMQ9 156 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 BET1O15155 118 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 TSPAN9O75954 239 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 SCGNO76038 276 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 HLA-DQB1P01920 261 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 GAPDHP04406 335 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 CRYBA1P05813 215 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 FCER2P06734 321 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 SNRNP70P08621 437 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF182P17025 639 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 TALDO1P37837 337 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 RAB7AP51149 207 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 TAS2R20P59543 309 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 BLCAPP62952 87 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 MRPS15P82914 257 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 HABP2Q14520 560 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 ARL6IP1Q15041 203 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 SRSF7Q16629 238 aaKnown RBP eCLIP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 RAB2BQ8WUD1 216 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 CAPSLQ8WWF8 208 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 ISOC1Q96CN7 298 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 S100A16Q96FQ6 103 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 ABHD14BQ96IU4 210 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 TOLLIPQ9H0E2 274 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 RBM38Q9H0Z9 239 aaKnown RBP11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 MIXL1Q9H2W2 232 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 DIABLOQ9NR28 239 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 RNF150Q9ULK6 438 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 TENM1Q9UKZ4 2725 aa11.36□□□□□ -0.59
SHKBP1-217ENST00000598558 MEIS3P1A6NDR6 274 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 SH2D7A6NKC9 451 aaPredicted RBP11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 CTDSP2O14595 271 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 AMY1AP04745 511 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 AMY2AP04746 511 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 ZBTB25P24278 435 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 BRS3P32247 399 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 LINC00205P59089 165 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 GNG2P59768 71 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 RPL15P61313 204 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 SRSF4Q08170 494 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 FOXL1Q12952 345 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 HNF4GQ14541 408 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 RPL39P5Q59GN2 51 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 DHRS7BQ6IAN0 325 aaPredicted RBP11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 CCDC144NLQ6NUI1 221 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 MOB3BQ86TA1 216 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 THNSL2Q86YJ6 484 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 OR8H3Q8N146 312 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 ACOT12Q8WYK0 555 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 C5orf30Q96GV9 206 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 C16orf95Q9H693 158 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF702PQ9H963 129 aa11.35□□□□□ -0.59
SHKBP1-217ENST00000598558 RDH8Q9NYR8 311 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms