RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 HKR1P10072 659 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 PVALBP20472 110 aaPredicted RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 APOBEC3AP31941 199 aaPredicted RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 P2RY1P47900 373 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 CATR1Q13166 79 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 EFNB3Q15768 340 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 PDZD9Q8IXQ8 264 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 UBALD1Q8TB05 177 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 LRRC20Q8TCA0 184 aa11.84□□□□□ -0.51
LIG3-205ENST00000585941 LSM10Q969L4 123 aaKnown RBP11.84□□□□□ -0.51
LIG3-205ENST00000585941 ARID1AO14497 2285 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 A0A1B0GU03 582 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 ANKRD34BA5PLL1 514 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 MSGN1A6NI15 193 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 FAM90A27PA6NNH2 459 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 TFF1P04155 84 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 NMBP08949 121 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 RRASP10301 218 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 MMP9P14780 707 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 NKX2-1P43699 371 aaPredicted RBP11.83□□□□□ -0.52
LIG3-205ENST00000585941 CCL8P80075 99 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 TMEM30BQ3MIR4 351 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 BAP18Q8IXM2 172 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 OR52L2PQ8NGH6 319 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 OR52M1Q8NGK5 317 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 SAP30LQ9HAJ7 183 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 KCNJ16Q9NPI9 418 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 DSCAMO60469 2012 aa11.83□□□□□ -0.52
LIG3-205ENST00000585941 NCOR2Q9Y618 2525 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 TRAV38-1A0A0B4J264 116 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 NKX6-3A6NJ46 265 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 LEUTXA8MZ59 168 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 B9A039 149 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 E7EQL1 145 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 F2RL2O00254 374 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 ADAM20O43506 726 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 ATG12O94817 140 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CYB5R3P00387 301 aaPredicted RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 SSTR5P35346 364 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 SNTB1Q13884 538 aaKnown RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 EIF5AL1Q6IS14 154 aaKnown RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 ZNF788Q6ZQV5 615 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 DMRTC2Q8IXT2 367 aaPredicted RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 TPRX1Q8N7U7 411 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 ZNRF1Q8ND25 227 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CA5BP1Q8WTZ4 195 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CITED4Q96RK1 184 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 GPHA2Q96T91 129 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 PARP12Q9H0J9 701 aaKnown RBP11.82□□□□□ -0.52
LIG3-205ENST00000585941 OR2D2Q9H210 308 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 DYNLRB1Q9NP97 96 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CYTL1Q9NRR1 136 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CHD8Q9HCK8 2581 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 CACNA1AO00555 2505 aa11.82□□□□□ -0.52
LIG3-205ENST00000585941 LGALS8O00214 317 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 KCNAB3O43448 404 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 GPR137BO60478 399 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 YPEL1O60688 119 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 GAPDHP04406 335 aaKnown RBP11.81□□□□□ -0.52
LIG3-205ENST00000585941 PPP1CCP36873 323 aaKnown RBP11.81□□□□□ -0.52
LIG3-205ENST00000585941 EDDM3BP56851 147 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 ADORA2A-AS1P86434 159 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 ZNF66Q6ZN08 573 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 COMMD7Q86VX2 200 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 RNASE11Q8TAA1 199 aaKnown RBP11.81□□□□□ -0.52
LIG3-205ENST00000585941 GAFA1Q96PS6 74 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 YPEL2Q96QA6 119 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 PFDN2Q9UHV9 154 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 RNF115Q9Y4L5 304 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 TANC2Q9HCD6 1990 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 DSCAML1Q8TD84 2053 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 TRGV10A0A0A0MS01 117 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 ITGB1BP1O14713 200 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 ATXN7O15265 892 aaPredicted RBP11.81□□□□□ -0.52
LIG3-205ENST00000585941 SIGLEC5O15389 551 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 JTBO76095 146 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 ID3Q02535 119 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 GALNT11Q8NCW6 608 aa11.81□□□□□ -0.52
LIG3-205ENST00000585941 HSD17B10Q99714 261 aaKnown RBP11.81□□□□□ -0.52
LIG3-205ENST00000585941 CGB3P0DN86 165 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 CGB7P0DN87 165 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 ZNF16P17020 682 aaPredicted RBP11.8□□□□□ -0.52
LIG3-205ENST00000585941 EIF4EBP1Q13541 118 aaPredicted RBP11.8□□□□□ -0.52
LIG3-205ENST00000585941 FAM201AQ5SY85 155 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 FAM219AQ8IW50 185 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 RFESDQ8TAC1 157 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 CALYQ9NYX4 217 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 GNG12Q9UBI6 72 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 LAMP3Q9UQV4 416 aa11.8□□□□□ -0.52
LIG3-205ENST00000585941 RCL1Q9Y2P8 373 aaKnown RBP11.8□□□□□ -0.52
LIG3-205ENST00000585941 RAI1Q7Z5J4 1906 aaPredicted RBP11.79□□□□□ -0.52
LIG3-205ENST00000585941 TMEM178BH3BS89 294 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 WRBO00258 174 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 PITX3O75364 302 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 AKR1C2P52895 323 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 TMEM33P57088 247 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 VAMP2P63027 116 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 LY6DQ14210 128 aa11.79□□□□□ -0.52
LIG3-205ENST00000585941 MORN2Q502X0 79 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms