RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TCRBV4S1A1TA0A5B7 111 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 NCBP2LA6PVI3 153 aaKnown RBP16.06■□□□□ 0.16
CLK3-225ENST00000569063 ZNF736B4DX44 427 aaPredicted RBP16.06■□□□□ 0.16
CLK3-225ENST00000569063 PDCD5O14737 125 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 IGHG2P01859 326 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 TMEM50BP56557 158 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 CLDN12P56749 244 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 UBE2UQ5VVX9 321 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 C10orf99Q6UWK7 81 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 MOB1BQ7L9L4 216 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 C1QL4Q86Z23 238 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 Q8N9W7 124 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 OR8H1Q8NGG4 311 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 YTHDF1Q9BYJ9 559 aaKnown RBP16.06■□□□□ 0.16
CLK3-225ENST00000569063 CHMP1AQ9HD42 196 aaPredicted RBP16.06■□□□□ 0.16
CLK3-225ENST00000569063 LIN7CQ9NUP9 197 aaKnown RBP16.06■□□□□ 0.16
CLK3-225ENST00000569063 STEAP1Q9UHE8 339 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 AK3Q9UIJ7 227 aa16.06■□□□□ 0.16
CLK3-225ENST00000569063 PSMB11A5LHX3 300 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 SAMD5Q5TGI4 173 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 SLC35E3Q7Z769 313 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 SPARTQ8N0X7 666 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 CHPT1Q8WUD6 406 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 ABCG5Q9H222 651 aa16.05■□□□□ 0.16
CLK3-225ENST00000569063 A0A1W2PRX2 142 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 SHISA3A0PJX4 238 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 SERPINE3A8MV23 424 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 G3V4G9 280 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 VEGFCP49767 419 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 LSAMPQ13449 338 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 HES5Q5TA89 166 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 OR56B1Q8NGI3 324 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 IL1F10Q8WWZ1 152 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 S1PR3Q99500 378 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 RAB22AQ9UL26 194 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 MGAT4AQ9UM21 535 aa16.04■□□□□ 0.16
CLK3-225ENST00000569063 TMEM272A0A1B0GTI8 110 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 IFITM5A6NNB3 132 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 MYL9P24844 172 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 BEAN1Q3B7T3 259 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 KPRPQ5T749 579 aaPredicted RBP16.03■□□□□ 0.16
CLK3-225ENST00000569063 ZNF833PQ6ZTB9 187 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 ZNF329Q86UD4 541 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 FOXRED2Q8IWF2 684 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 OR2AK2Q8NG84 335 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 SETD6Q8TBK2 473 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 FCGR1BQ92637 280 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 ARHGAP5-AS1Q96IT6 56 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 NOL4LQ96MY1 436 aaPredicted RBP16.03■□□□□ 0.16
CLK3-225ENST00000569063 HDHD3Q9BSH5 251 aaPredicted RBP16.03■□□□□ 0.16
CLK3-225ENST00000569063 PECRQ9BY49 303 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 C12orf4Q9NQ89 552 aa16.03■□□□□ 0.16
CLK3-225ENST00000569063 LINC01548A6NM66 108 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 GPR12P47775 334 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 F2RL1P55085 397 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 OR10A3P58181 314 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 PLA2G7Q13093 441 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 PLAC9Q5JTB6 97 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 FAM71E2Q8N5Q1 922 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 WFDC9Q8NEX5 89 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 RASL11BQ9BPW5 248 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 NABP2Q9BQ15 211 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 IFI27L2Q9H2X8 130 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 Q9N2K0 584 aa16.02■□□□□ 0.16
CLK3-225ENST00000569063 SAA2-SAA4A0A096LPE2 208 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 ITGB1BP1O14713 200 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 SAA2P0DJI9 122 aaPredicted RBP16.01■□□□□ 0.15
CLK3-225ENST00000569063 RAB3BP20337 219 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 OR3A3P47888 321 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 SLC35B1P78383 322 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 HLA-DRB3P79483 266 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 C22orf42Q6IC83 251 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 FAM71F2Q6NXP2 309 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 STPG2Q8N412 459 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 COMMD1Q8N668 190 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 RBMXL1Q96E39 390 aaKnown RBP16.01■□□□□ 0.15
CLK3-225ENST00000569063 MRPL20Q9BYC9 149 aaKnown RBP16.01■□□□□ 0.15
CLK3-225ENST00000569063 PIPOXQ9P0Z9 390 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 SLC23A1Q9UHI7 598 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 LINC00527Q9UJ94 153 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 PLXNB1O43157 2135 aa16.01■□□□□ 0.15
CLK3-225ENST00000569063 AP4M1O00189 453 aa16■□□□□ 0.15
CLK3-225ENST00000569063 PF4V1P10720 104 aa16■□□□□ 0.15
CLK3-225ENST00000569063 ZBTB25P24278 435 aa16■□□□□ 0.15
CLK3-225ENST00000569063 PSMB9P28065 219 aa16■□□□□ 0.15
CLK3-225ENST00000569063 FGF9P31371 208 aaPredicted RBP16■□□□□ 0.15
CLK3-225ENST00000569063 CMSS1Q9BQ75 279 aaKnown RBP16■□□□□ 0.15
CLK3-225ENST00000569063 GHITMQ9H3K2 345 aa16■□□□□ 0.15
CLK3-225ENST00000569063 KCNK7Q9Y2U2 307 aa16■□□□□ 0.15
CLK3-225ENST00000569063 NOTCH1P46531 2555 aa16■□□□□ 0.15
CLK3-225ENST00000569063 RAB29O14966 203 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 ST8SIA5O15466 376 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 RAB6AP20340 208 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 KHDC1LQ5JSQ8 128 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 NR2C2APQ86WQ0 139 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 RAB3CQ96E17 227 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 ZNF251Q9BRH9 671 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 AGMATQ9BSE5 352 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 GON7Q9BXV9 100 aa15.99■□□□□ 0.15
CLK3-225ENST00000569063 ZFP57Q9NU63 452 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms