RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 C1QL1O75973 258 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 CST7O76096 145 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 CLDN14O95500 239 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 F12P00748 615 aaPredicted RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 HBZP02008 142 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 CRYABP02511 175 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 OMGP23515 440 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 RPS23P62266 143 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 SERF2P84101 59 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 SRSF6Q13247 344 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 PMS2P11Q13670 270 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 CR1LQ2VPA4 569 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 LRRC75BQ2VPJ9 315 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 TMEM30BQ3MIR4 351 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 KHDC3LQ587J8 217 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 AWAT1Q58HT5 328 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 KRBOX4Q5JUW0 171 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 TIMM23BQ5SRD1 257 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 C1orf185Q5T7R7 199 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 PRAMEF6Q5VXH4 476 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 SLC25A24Q6NUK1 477 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 TMEM88Q6PEY1 159 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 TMEM14EPQ6UXP3 125 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 Q6ZR03 302 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 Q6ZS92 163 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 ZNF525Q8N782 197 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 ZNF610Q8N9Z0 462 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 OR1L1Q8NH94 360 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 SCGB1C1Q8TD33 95 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 CD300LFQ8TDQ1 290 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 MBD3L1Q8WWY6 194 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 EDARADDQ8WWZ3 215 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 PINX1Q96BK5 328 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 CIB3Q96Q77 187 aaPredicted RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 HSD17B10Q99714 261 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 SFXN3Q9BWM7 321 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 MRPL37Q9BZE1 423 aaKnown RBP5.25□□□□□ -1.57
CLN3-223ENST00000566472 OR2D2Q9H210 308 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 BIN3Q9NQY0 253 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 DKK4Q9UBT3 224 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 HSPB7Q9UBY9 170 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 OR14J1Q9UGF5 321 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 JPT1Q9UK76 154 aa5.25□□□□□ -1.57
CLN3-223ENST00000566472 LOC102723971A0A1B0GUV8 181 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 MEX3AA1L020 520 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 C7orf77A4D0Y5 90 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 MGST3O14880 152 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 WNT9BO14905 357 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 RBFOX2O43251 390 aaKnown RBP eCLIP5.24□□□□□ -1.57
CLN3-223ENST00000566472 SOX15O60248 233 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 ZNF737O75373 536 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 AGFG2O95081 481 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 IGHV3-13P01766 116 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 MT-ND4LP03901 98 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 IFNA4P05014 189 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 SRP19P09132 144 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 ZNF16P17020 682 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 NFYBP25208 207 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 MAS1LP35410 378 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TIMP3P35625 211 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 GLRXP35754 106 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TAGLN2P37802 199 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 KIR2DS2P43631 304 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 GABRA2P47869 451 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 HOXA1P49639 335 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 FHITP49789 147 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 ASCL1P50553 236 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 RAB13P51153 203 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 RAB5BP61020 215 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 UBE2KP61086 200 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 COL10A1Q03692 680 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TNFRSF9Q07011 255 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TMEM267Q0VDI3 215 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 FOXF2Q12947 444 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 AARDQ4LEZ3 155 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 SOHLH1Q5JUK2 328 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 Q6ZRM9 215 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 ZNF826PQ6ZT77 177 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 SEM1Q6ZVN7 128 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 SSX8Q7RTT4 187 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 CENPVQ7Z7K6 275 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 LILRB2Q8N423 598 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 FGFRL1Q8N441 504 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 PRR18Q8N4B5 295 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 GCSAMQ8N6F7 178 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TMEM217Q8N7C4 229 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 RXFP4Q8TDU9 374 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 LRRC29Q8WV35 223 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 MALSU1Q96EH3 234 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 SNX22Q96L94 193 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 GPHA2Q96T91 129 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 TMEM147Q9BVK8 224 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 WDR61Q9GZS3 305 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 PARP12Q9H0J9 701 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 OPN3Q9H1Y3 402 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 RPS10P5Q9NQ39 176 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 CISD1Q9NZ45 108 aaKnown RBP5.24□□□□□ -1.57
CLN3-223ENST00000566472 GAB2Q9UQC2 676 aa5.24□□□□□ -1.57
CLN3-223ENST00000566472 PRELID1Q9Y255 219 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms