RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ARR3P36575 388 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 CLDN12P56749 244 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 LINC00313P59037 77 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 UBE2G2P60604 165 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 STX4Q12846 297 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 TSPAN31Q12999 210 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 EXOC3L4Q17RC7 722 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 PDPK2PQ6A1A2 396 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 HBMQ6B0K9 141 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 XKRXQ6PP77 449 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 CCDC121Q6ZUS5 278 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 NAA40Q86UY6 237 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 BLIDQ8IZY5 108 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 KRTCAP2Q8N6L1 136 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 ZFAND2AQ8N6M9 145 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 TRIML2Q8N7C3 387 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 OR5L1Q8NGL2 311 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 UPK3BQ9BT76 320 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 VCX3AQ9NNX9 186 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 TP53TG1Q9Y2A0 90 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 ZNF638Q14966 1978 aaKnown RBP0.74□□□□□ -2.29
SCFD1-216ENST00000555550 RIMS2Q9UQ26 1411 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 IGLV3-9A0A075B6K5 115 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 VPS37CA5D8V6 355 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 UGT2B11O75310 529 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 RD3LP0DJH9 198 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 SYT1P21579 422 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 INPP1P49441 399 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 UBE2KP61086 200 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 HBG1P69891 147 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 HBG2P69892 147 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 PRB3Q04118 309 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 HTR4Q13639 388 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 WDR43Q15061 677 aaKnown RBP eCLIP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 SYCP1Q15431 976 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 FAM19A5Q7Z5A7 132 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 MTERF4Q7Z6M4 381 aaKnown RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 SPATA24Q86W54 205 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 C10orf107Q8IVU9 208 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 GATD1Q8NB37 220 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 ERMNQ8TAM6 284 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 KCTD4Q8WVF5 259 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 CCDC124Q96CT7 223 aaKnown RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 MRAP2Q96G30 205 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 PGLYRP3Q96LB9 341 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 TMEM56Q96MV1 263 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 CYTH2Q99418 400 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 GPR22Q99680 433 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 PITX2Q99697 317 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 COPS4Q9BT78 406 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 C1QTNF6Q9BXI9 259 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 PARD6GQ9BYG4 376 aaPredicted RBP0.73□□□□□ -2.29
SCFD1-216ENST00000555550 ASCL3Q9NQ33 180 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 C1orf109Q9NX04 203 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 C15orf41Q9Y2V0 281 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 HEY1Q9Y5J3 304 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 MUC2Q02817 5179 aa0.73□□□□□ -2.29
SCFD1-216ENST00000555550 RTEL1-TNFRSF6BF6WH68 1400 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 CCDC88CQ9P219 2028 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TTC28Q96AY4 2481 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 NYNRINQ9P2P1 1898 aaKnown RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TRPC5OSA6NMA1 111 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 C9J4A7 227 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TOR1AO14656 332 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 CALUO43852 315 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 ORM1P02763 201 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 UGT2B10P36537 528 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 RANBP1P43487 201 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DSTNP60981 165 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 FGF12P61328 243 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 RHOAP61586 193 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 PDGFRLQ15198 375 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TRIP13Q15645 432 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 ZNHIT3Q15649 155 aaPredicted RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TBC1D28Q2M2D7 210 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 FAM45BPQ6NSW5 357 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DRAM2Q6UX65 266 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DGAT2L6Q6ZPD8 337 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 SSX7Q7RTT5 188 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 SSX6Q7RTT6 188 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 IQCF2Q8IXL9 164 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 SYCE1Q8N0S2 351 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 OR8G5Q8NG78 346 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 ZNRF2Q8NHG8 242 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 SPPL2BQ8TCT7 592 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 CD200R1Q8TD46 325 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 C10orf105Q8TEF2 133 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 CASTOR1Q8WTX7 329 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 NELFBQ8WX92 580 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 TRNT1Q96Q11 434 aaKnown RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 ZNF426Q9BUY5 554 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 UGT2B28Q9BY64 529 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 OR51B6Q9H340 312 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 FBXL15Q9H469 300 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DIABLOQ9NR28 239 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DOK5Q9P104 306 aa0.72□□□□□ -2.29
SCFD1-216ENST00000555550 MRPS16Q9Y3D3 137 aaKnown RBP0.72□□□□□ -2.29
SCFD1-216ENST00000555550 DSCAML1Q8TD84 2053 aa0.71□□□□□ -2.3
SCFD1-216ENST00000555550 MYO5BQ9ULV0 1848 aa0.71□□□□□ -2.3
SCFD1-216ENST00000555550 TINCRA0A1B0GVN0 87 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms