RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 AMMECR1LQ6DCA0 310 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SHISA5Q8N114 240 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM89BQ8N5H3 189 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 TCTEX1D1Q8N7M0 179 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SIGLECL1Q8N7X8 197 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 NT5CQ8TCD5 201 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 CPT1CQ8TCG5 803 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 TMEM186Q96B77 213 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SARAFQ96BY9 339 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 MSI2Q96DH6 328 aaKnown RBP8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 VSIRQ9H7M9 311 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 ZDHHC11Q9H8X9 412 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 FREM3P0C091 2139 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 OR2T8A6NH00 312 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 F2Z2F3 143 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 TAX1BP3O14907 124 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 IFNA1P01562 189 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 WNT2P09544 360 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SMIM10L1P0DMW3 83 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 CRISP2P16562 243 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 NBL1P41271 181 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 ARL4DP49703 201 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 PPP1CBP62140 327 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF154Q13106 437 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SCGB2A2Q13296 93 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 EXT1Q16394 746 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 TCF24Q7RTU0 167 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 PRSS41Q7RTY9 318 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 PNKDQ8N490 385 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 ZIC4Q8N9L1 334 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 OR5B3Q8NH48 314 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 ADIPOR1Q96A54 375 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SMIM10Q96HG1 83 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 DECR2Q9NUI1 292 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SMPXQ9UHP9 88 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 SEC16AO15027 2179 aa8.13□□□□□ -1.11
CTNNA1-243ENST00000540387 PCNX3Q9H6A9 2034 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 HS3ST1O14792 307 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 OR7C2O60412 319 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF737O75373 536 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 CD99P14209 185 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 NKX2-1P43699 371 aaPredicted RBP8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 OR3A4PP47883 348 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 ARG2P78540 354 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 MEF2BQ02080 365 aaPredicted RBP8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 PAX2Q02962 417 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 ODF1Q14990 250 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 ABCA11PQ4W5N1 156 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 BAGE3Q86Y29 109 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 BAGE2Q86Y30 109 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 SLC38A9Q8NBW4 561 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 OR4F17Q8NGA8 305 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 OR52N5Q8NH56 324 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 OR4F4Q96R69 305 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 LIME1Q9H400 295 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 DOCK11Q5JSL3 2073 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 PHF3Q92576 2039 aaKnown RBP8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 IGHV5-10-1A0A0J9YXX1 117 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 NKX2-6A6NCS4 301 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 G3V3Y1 287 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 G3V4G9 280 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 GNG7O60262 68 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 NPIPB7O75200 414 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 CPMP14384 443 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 SRPXP78539 464 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 PHLDA2Q53GA4 152 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 RAET1LQ5VY80 246 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 MUC15Q8N387 334 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 WNT10AQ9GZT5 417 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 MMP25Q9NPA2 562 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 PLSCR4Q9NRQ2 329 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 METRNQ9UJH8 293 aa8.12□□□□□ -1.11
CTNNA1-243ENST00000540387 NTN3O00634 580 aaPredicted RBP8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 IGKV1D-16P01601 117 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 GPX1P07203 203 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ASAH2BP0C7U1 165 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ACP1P24666 158 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 GNRHRP30968 328 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 YPEL3P61236 119 aaPredicted RBP8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 PRTGQ2VWP7 1150 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM71F2Q6NXP2 309 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ASB10Q8WXI3 467 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 KLHDC3Q9BQ90 382 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 RSG1Q9BU20 258 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 PECRQ9BY49 303 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 CHRNA10Q9GZZ6 450 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 OR10A2Q9H208 303 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 WDFY3Q8IZQ1 3526 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 GJE1A6NN92 205 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 TMEM150CB9EJG8 249 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 RBFOX2O43251 390 aaKnown RBP eCLIP8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 SLC16A7O60669 478 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF205O95201 554 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 TMEM50AO95807 157 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF728P0DKX0 622 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 PLPPR5Q32ZL2 321 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM180AQ6UWF9 173 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF440Q8IYI8 595 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 OR2M3Q8NG83 312 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 OR5D14Q8NGL3 314 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms