RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 OR11H1Q8NG94 326 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 OR10A6Q8NH74 314 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 C16orf78Q8WTQ4 265 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 ACBD6Q9BR61 282 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 Q9BRP9 147 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 ZNF426Q9BUY5 554 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 TRPM6Q9BX84 2022 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 PLCH2O75038 1416 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 MAP3K19Q56UN5 1328 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 EFCAB9A8MZ26 197 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 HSBP1L1C9JCN9 74 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 SCN2BO60939 215 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 SNAP29O95721 258 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 APOA1P02647 267 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 SLC35E2BP0CK96 405 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 CD36P16671 472 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 GADD45AP24522 165 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 RCVRNP35243 200 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 SLC35A2P78381 396 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 STX3Q13277 289 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 RAB31Q13636 194 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 CENPWQ5EE01 88 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 Q6ZSA8 131 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 CCDC121Q6ZUS5 278 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 CFAP53Q96M91 514 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 MBOAT7Q96N66 472 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 C11orf1Q9H5F2 150 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 MRPS16Q9Y3D3 137 aaKnown RBP1.26□□□□□ -2.21
CD44-215ENST00000525241 FIS1Q9Y3D6 152 aa1.26□□□□□ -2.21
CD44-215ENST00000525241 TEP1Q99973 2627 aaKnown RBP1.25□□□□□ -2.21
CD44-215ENST00000525241 KIAA0232Q92628 1395 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 IGHV3-73A0A0B4J1V6 119 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 LINC00854A0A1B0GVQ3 168 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 FADS2O95864 444 aaKnown RBP1.25□□□□□ -2.21
CD44-215ENST00000525241 NQO2P16083 231 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 PPP1CCP36873 323 aaKnown RBP1.25□□□□□ -2.21
CD44-215ENST00000525241 SULT1A2P50226 295 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 N4BP2L1Q5TBK1 243 aaPredicted RBP1.25□□□□□ -2.21
CD44-215ENST00000525241 DOLPP1Q86YN1 238 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 OR4P4Q8NGL7 312 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 OR4X1Q8NH49 305 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 RORBQ92753 470 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 HBEGFQ99075 208 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 TBX5Q99593 518 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 ZNF471Q9BX82 626 aaPredicted RBP1.25□□□□□ -2.21
CD44-215ENST00000525241 CDCA4Q9BXL8 241 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 CHST5Q9GZS9 411 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 TMEM216Q9P0N5 145 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 MPDZO75970 2070 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 DSCAML1Q8TD84 2053 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 PTPN13Q12923 2485 aa1.25□□□□□ -2.21
CD44-215ENST00000525241 RTEL1-TNFRSF6BF6WH68 1400 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 PRRC2BQ5JSZ5 2229 aaKnown RBP1.24□□□□□ -2.21
CD44-215ENST00000525241 COL4A1P02462 1669 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 IGLV3-9A0A075B6K5 115 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 GOLGA8QA0A0J9YX86 632 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 DHRS12A0PJE2 317 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 MKRN2OSH3BPM6 223 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 NDUFS6O75380 124 aaKnown RBP1.24□□□□□ -2.21
CD44-215ENST00000525241 NPPAP01160 153 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 ESDP10768 282 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 SLC25A16P16260 332 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 CASQ1P31415 396 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 CD200P41217 278 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 PSMB3P49720 205 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 TRMT12Q53H54 448 aaKnown RBP1.24□□□□□ -2.21
CD44-215ENST00000525241 RASL11AQ6T310 242 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 C17orf78Q8N4C9 275 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 TMEM75Q8N9X5 138 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 OR5K1Q8NHB7 308 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 CCDC127Q96BQ5 260 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 CCDC124Q96CT7 223 aaKnown RBP1.24□□□□□ -2.21
CD44-215ENST00000525241 SERPINB11Q96P15 392 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 GPR22Q99680 433 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 MGLLQ99685 303 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 MED18Q9BUE0 208 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 PECRQ9BY49 303 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 TREM1Q9NP99 234 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 COMMD9Q9P000 198 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 PSMD13Q9UNM6 376 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 NAV1Q8NEY1 1877 aa1.24□□□□□ -2.21
CD44-215ENST00000525241 PHYHO14832 338 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 CYTH3O43739 400 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 LIMS3P0CW19 117 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 LIMS4P0CW20 117 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 ORM2P19652 201 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 ALOX5APP20292 161 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 TSPEAR-AS2P59090 65 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 FGF12P61328 243 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 FAM3AP98173 230 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 GTF2BQ00403 316 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 OR4D1Q15615 310 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 TMEM249Q2WGJ8 235 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 Q6ZRN7 208 aaPredicted RBP1.23□□□□□ -2.21
CD44-215ENST00000525241 OTUD6BQ8N6M0 293 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 TAMM41Q96BW9 452 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 SPACA1Q9HBV2 294 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 PRO2289Q9P1D8 64 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 ALG5Q9Y673 324 aa1.23□□□□□ -2.21
CD44-215ENST00000525241 GMEB1Q9Y692 573 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms