RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 CFL1P23528 166 aaKnown RBP2.06□□□□□ -2.08
USP53-204ENST00000507906 CXCR4P61073 352 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 DAD1P61803 113 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 HERVK_113P63121 156 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 CST9Q5W186 159 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 Q6ZQT7 251 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 ZNF567Q8N184 647 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 EIF4E3Q8N5X7 224 aaKnown RBP2.06□□□□□ -2.08
USP53-204ENST00000507906 OR2V1Q8NHB1 315 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 CD200R1Q8TD46 325 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 CYGBQ8WWM9 190 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 TRIB3Q96RU7 358 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 SPZ1Q9BXG8 430 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 MAP1LC3AQ9H492 121 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 UBQLN4Q9NRR5 601 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 USE1Q9NZ43 259 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 POLR3HQ9Y535 204 aaPredicted RBP2.06□□□□□ -2.08
USP53-204ENST00000507906 NPATQ14207 1427 aa2.06□□□□□ -2.08
USP53-204ENST00000507906 COL18A1P39060 1754 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 MYO5BQ9ULV0 1848 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 A0A1B0GU33 70 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 PFDN6O15212 129 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 EEF1E1O43324 174 aaKnown RBP2.05□□□□□ -2.08
USP53-204ENST00000507906 STX10O60499 249 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 GUSBP08236 651 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 OR12D1P0DN82 309 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 CD36P16671 472 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 CDK2P24941 298 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 COL8A2P25067 703 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 RPS12P25398 132 aaKnown RBP2.05□□□□□ -2.08
USP53-204ENST00000507906 CD79BP40259 229 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 REG1BP48304 166 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 KRTAP10-10P60014 251 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 IHHQ14623 411 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 ZNF141Q15928 474 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 HS3ST5Q8IZT8 346 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 ZFAND2AQ8N6M9 145 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 ZNF565Q8N9K5 539 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 LINC00304Q8N9R0 145 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 MUC7Q8TAX7 377 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 HIST1H2BAQ96A08 127 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 PTH2Q96A98 100 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 TLCD1Q96CP7 247 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 IGF2BP2-AS1Q96M15 143 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 EBNA1BP2Q99848 306 aaKnown RBP2.05□□□□□ -2.08
USP53-204ENST00000507906 MED18Q9BUE0 208 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 DUSP21Q9H596 190 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 C16orf95Q9H693 158 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 ASF1BQ9NVP2 202 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 TAS2R1Q9NYW7 299 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 CARHSP1Q9Y2V2 147 aaKnown RBP2.05□□□□□ -2.08
USP53-204ENST00000507906 SNX10Q9Y5X0 201 aa2.05□□□□□ -2.08
USP53-204ENST00000507906 EVPLLA8MZ36 301 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 TGOLN2O43493 480 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 SLC25A20O43772 301 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 DEDDO75618 318 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 ADGRL1O94910 1474 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 IGLV3-19P01714 112 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 CRYBA1P05813 215 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 RPL12P30050 165 aaKnown RBP2.04□□□□□ -2.08
USP53-204ENST00000507906 BIKQ13323 160 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 NID2Q14112 1375 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 FAM229BQ4G0N7 80 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 DEFB134Q4QY38 66 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 SPIN4Q56A73 249 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 SAPCD1Q5SSQ6 148 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 AMMECR1LQ6DCA0 310 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 ZFAND6Q6FIF0 208 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 THADAQ6YHU6 1953 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 NAA40Q86UY6 237 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 NATD1Q8N6N6 113 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 TMEM161BQ8NDZ6 487 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 BPIFB6Q8NFQ5 453 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 LMX1AQ8TE12 382 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 RNF133Q8WVZ7 376 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 ABCC11Q96J66 1382 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 PACRGQ96M98 296 aaPredicted RBP2.04□□□□□ -2.08
USP53-204ENST00000507906 OR7D2Q96RA2 312 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 BCL2L14Q9BZR8 327 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 XPNPEP1Q9NQW7 623 aa2.04□□□□□ -2.08
USP53-204ENST00000507906 SPANXB1Q9NS25 103 aaPredicted RBP2.04□□□□□ -2.08
USP53-204ENST00000507906 SHANK1Q9Y566 2161 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 CHD2O14647 1828 aaKnown RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 IGSF23A1L1A6 192 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 LRRN3E7EW58 273 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 H3BSA7 217 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 M0R381 172 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 COPEO14579 308 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 SLC16A4O15374 487 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 IFNA5P01569 189 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 IGKV1-17P01599 117 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 IGLV3-27P01718 113 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 OPN1SWP03999 348 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 OR1E2P47887 323 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 NKX2-5P52952 324 aaPredicted RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 FGF12P61328 243 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 FLI1Q01543 452 aaPredicted RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 BAMBIQ13145 260 aa2.03□□□□□ -2.08
USP53-204ENST00000507906 JOSD1Q15040 202 aaPredicted RBP2.03□□□□□ -2.08
USP53-204ENST00000507906 PDK2Q15119 407 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms