RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PPT1P50897 306 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 RPS11P62280 158 aaKnown RBP eCLIP6.68□□□□□ -1.34
SCN1A-207ENST00000507401 PAX2Q02962 417 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 ZNF85Q03923 595 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 DHRS2Q13268 280 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 INSL4Q14641 139 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 OR8G1Q15617 311 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 HAGHQ16775 308 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 GFOD2Q3B7J2 385 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 SNAI3Q3KNW1 292 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 ANKRD39Q53RE8 183 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 ACTBL2Q562R1 376 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 MOGAT3Q86VF5 341 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 OR6K6Q8NGW6 343 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 OR5AK2Q8NH90 309 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 C2CD4CQ8TF44 421 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 PPP1R1CQ8WVI7 109 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 RNF133Q8WVZ7 376 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 DVL3Q92997 716 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-207ENST00000507401 PELI1Q96FA3 418 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 NEIL1Q96FI4 390 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-207ENST00000507401 NEU1Q99519 415 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 MICU1Q9BPX6 476 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 SULT4A1Q9BR01 284 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 CHST5Q9GZS9 411 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 RGCCQ9H4X1 137 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 FN3KRPQ9HA64 309 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 CHMP1AQ9HD42 196 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-207ENST00000507401 NOX4Q9NPH5 578 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 CENPMQ9NSP4 180 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 RNF7Q9UBF6 113 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 CACFD1Q9UGQ2 172 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 FAM96BQ9Y3D0 163 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 AK6Q9Y3D8 172 aaKnown RBP6.68□□□□□ -1.34
SCN1A-207ENST00000507401 TMEM14AQ9Y6G1 99 aa6.68□□□□□ -1.34
SCN1A-207ENST00000507401 TRBV5-5A0A0J9YX44 114 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TMEM89A2RUT3 159 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 BTBD17A6NE02 478 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TMEM212A6NML5 194 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 M0QZK8 103 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TNFRSF13BO14836 293 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TXNL1O43396 289 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 GGCTO75223 188 aaKnown RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 GYPBP06028 91 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 CLUP10909 449 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 RPS2P15880 293 aaKnown RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 MUC1P15941 1255 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 CA6P23280 308 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 DDTP30046 118 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 CD80P33681 288 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 NPY4RP50391 375 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 OR12D2P58182 307 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 BPIFB3P59826 476 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 GNB2P62879 340 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 NHLH2Q02577 135 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 EIF2B1Q14232 305 aaKnown RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 GLYATL3Q5SZD4 288 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 PRSS54Q6PEW0 395 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 BTNL3Q6UXE8 466 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 RBMS3Q6XE24 437 aaKnown RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 DPY19L4Q7Z388 723 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 SLC35F2Q8IXU6 374 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 BPIFB2Q8N4F0 458 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 BBS1Q8NFJ9 593 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 OR51S1Q8NGJ8 323 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 OR4A4PQ8NGN8 299 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 R3HDM4Q96D70 268 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 KIRREL1Q96J84 757 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 INTS14Q96SY0 518 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 ABHD6Q9BV23 337 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 SSBP3Q9BWW4 388 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 KRTAP4-7Q9BYR0 210 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 COMMD4Q9H0A8 199 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 RAB18Q9NP72 206 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 FAM212BQ9NTI7 297 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 CLN8Q9UBY8 286 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 STRAPQ9Y3F4 350 aaKnown RBP6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TENM1Q9UKZ4 2725 aa6.67□□□□□ -1.34
SCN1A-207ENST00000507401 TRBV5-7A0A0A0MS05 114 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 IGHV2-70DA0A0C4DH43 119 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 A6NIN4 97 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 FAM183AA6NL82 134 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 ANKRD30BLA7E2S9 258 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 B4DEV8 164 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 ZNF736B4DX44 427 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-207ENST00000507401 PPP1R2P9O14990 202 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 CST4P01036 141 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 LHBP01229 141 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 HLA-AP01891 365 aaKnown RBP6.66□□□□□ -1.34
SCN1A-207ENST00000507401 LIPFP07098 398 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 FCGR3AP08637 254 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 FGF7P21781 194 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 ZBTB25P24278 435 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 HSD11B1P28845 292 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 ECI1P42126 302 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 FAM3AP98173 230 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 GAGE1Q13065 139 aa6.66□□□□□ -1.34
SCN1A-207ENST00000507401 RNASE12Q5GAN4 147 aaKnown RBP6.66□□□□□ -1.34
SCN1A-207ENST00000507401 KLF17Q5JT82 389 aaPredicted RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms