RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 WDR12Q9GZL7 423 aaKnown RBP12.35□□□□□ -0.43
NPHP4-205ENST00000466897 GHITMQ9H3K2 345 aa12.35□□□□□ -0.43
NPHP4-205ENST00000466897 OR1A1Q9P1Q5 309 aa12.35□□□□□ -0.43
NPHP4-205ENST00000466897 AMMECR1Q9Y4X0 333 aaPredicted RBP12.35□□□□□ -0.43
NPHP4-205ENST00000466897 FAM172BPA6NC97 362 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 ZNF736B4DX44 427 aaPredicted RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 INAFM1C9JVW0 142 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 BET1O15155 118 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 TUSC2O75896 110 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 CD74P04233 296 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 ARG1P05089 322 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 OR5H8P0DN80 308 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 SAA4P35542 130 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 SRP14P37108 136 aaKnown RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 CEACAM6P40199 344 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 PRB3Q04118 309 aaPredicted RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 DYRK1AQ13627 763 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 OR2AK2Q8NG84 335 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 OR10V1Q8NGI7 309 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 OR5H2Q8NGV7 314 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 LEAP2Q969E1 77 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 GINS4Q9BRT9 223 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 THAP7Q9BT49 309 aaPredicted RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 BEX2Q9BXY8 128 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 RDH8Q9NYR8 311 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 ZNF69Q9UC07 566 aa12.34□□□□□ -0.43
NPHP4-205ENST00000466897 SONP18583 2426 aaKnown RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 ANK3Q12955 4377 aaKnown RBP12.34□□□□□ -0.43
NPHP4-205ENST00000466897 ANKRD20A5PA0PJZ0 165 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 BUB1B-PAK6H3BSN5 160 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 HTR1DP28221 377 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 CD40LGP29965 261 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 HRH1P35367 487 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 CEACAM3P40198 252 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 OR3A3P47888 321 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 GNG10P50151 68 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 ZNF134P52741 427 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 LGALS4P56470 323 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 RNASE12Q5GAN4 147 aaKnown RBP12.33□□□□□ -0.44
NPHP4-205ENST00000466897 CT45A1Q5HYN5 189 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 FAM53AQ6NSI3 398 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-205ENST00000466897 FAM71F2Q6NXP2 309 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 DHRS11Q6UWP2 260 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 CT45A3Q8NHU0 189 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 GIMAP1Q8WWP7 306 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 MALSU1Q96EH3 234 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 SDHCQ99643 169 aaPredicted RBP12.33□□□□□ -0.44
NPHP4-205ENST00000466897 AGMATQ9BSE5 352 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 CCDC32Q9BV29 185 aa12.33□□□□□ -0.44
NPHP4-205ENST00000466897 LEUTXA8MZ59 168 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 OOSP1A8MZH6 123 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 LY6LH3BQJ8 138 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 CRLF1O75462 422 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 SRD5A1P18405 259 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 EPHA1P21709 976 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 IL3RAP26951 378 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 HLA-DMAP28067 261 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 PPP5CP53041 499 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 RIPPLY3P57055 190 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 AP3S2P59780 193 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 LSAMPQ13449 338 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 ZNF846Q147U1 533 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 MEF2DQ14814 521 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 RNASE10Q5GAN6 216 aaKnown RBP12.32□□□□□ -0.44
NPHP4-205ENST00000466897 RUSC1-AS1Q66K80 236 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 ZNF660Q6AZW8 331 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-205ENST00000466897 BRD3OSQ6XYD6 125 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 IL17RELQ6ZVW7 336 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 Q71RC1 249 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-205ENST00000466897 PDZD9Q8IXQ8 264 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 ARRDC1Q8N5I2 433 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 OR10X1Q8NGY0 326 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 AJUBAQ96IF1 538 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 MS4A7Q9GZW8 240 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-205ENST00000466897 C11orf54Q9H0W9 315 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-205ENST00000466897 IFI27L2Q9H2X8 130 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 PRDM13Q9H4Q3 707 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 EHFQ9NZC4 300 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 PIPOXQ9P0Z9 390 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 DPM3Q9P2X0 92 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 GAB2Q9UQC2 676 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 OR2W1Q9Y3N9 320 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 MXRA5Q9NR99 2828 aa12.32□□□□□ -0.44
NPHP4-205ENST00000466897 IGHV3OR16-10A0A075B7F0 116 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 SLC31A2O15432 143 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 LANCL1O43813 399 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 IGHV3-7P01780 117 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 PMP2P02689 132 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 CD3DP04234 171 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 FCER2P06734 321 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 LDLRAD2Q5SZI1 272 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 STEAP1BQ6NZ63 245 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 ODF3L1Q8IXM7 274 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-205ENST00000466897 ST6GALNAC6Q969X2 333 aa12.31□□□□□ -0.44
NPHP4-205ENST00000466897 PARP12Q9H0J9 701 aaKnown RBP12.31□□□□□ -0.44
NPHP4-205ENST00000466897 A0A0U1RQK1 487 aa12.3□□□□□ -0.44
NPHP4-205ENST00000466897 RAB29O14966 203 aa12.3□□□□□ -0.44
NPHP4-205ENST00000466897 TXNL1O43396 289 aa12.3□□□□□ -0.44
NPHP4-205ENST00000466897 SLC22A5O76082 557 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms