RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 ACTG1P63261 375 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 GNMTQ14749 295 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 PLA1AQ53H76 456 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 Q6ZPA2 131 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 IZUMO1Q8IYV9 350 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 OR8H3Q8N146 312 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 OR10J5Q8NHC4 309 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 CHIAQ9BZP6 476 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 GHITMQ9H3K2 345 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 ZNF230Q9UIE0 474 aaPredicted RBP16■□□□□ 0.15
COL9A3-204ENST00000463487 A0A1W2PPE3 182 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 LY6LH3BQJ8 138 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 GAPDHP04406 335 aaKnown RBP15.99■□□□□ 0.15
COL9A3-204ENST00000463487 CTXN2P0C2S0 81 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 TAS2R20P59543 309 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 SRSF2Q01130 221 aaKnown RBP15.99■□□□□ 0.15
COL9A3-204ENST00000463487 UTF1Q5T230 341 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 ZNF439Q8NDP4 499 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 C15orf40Q8WUR7 153 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 GINS4Q9BRT9 223 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 IFT46Q9NQC8 304 aa15.99■□□□□ 0.15
COL9A3-204ENST00000463487 ELF5Q9UKW6 265 aaPredicted RBP15.99■□□□□ 0.15
COL9A3-204ENST00000463487 ITGB1BP1O14713 200 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 HSD17B6O14756 317 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 BET1O15155 118 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 ELK1P19419 428 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 CEACAM6P40199 344 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 CT45A1Q5HYN5 189 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 LDLRAD2Q5SZI1 272 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 LYG1Q8N1E2 194 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 DYNAPQ8N1N2 210 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 CT45A3Q8NHU0 189 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 MAFIPQ8WZ33 124 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 CABLES2Q9BTV7 478 aa15.98■□□□□ 0.15
COL9A3-204ENST00000463487 RBM38Q9H0Z9 239 aaKnown RBP15.98■□□□□ 0.15
COL9A3-204ENST00000463487 MRPS7Q9Y2R9 242 aaKnown RBP15.98■□□□□ 0.15
COL9A3-204ENST00000463487 GPR137BO60478 399 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 TPPPO94811 219 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 GSTT2P0CG29 244 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 GSTT2BP0CG30 244 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 PRSS3P35030 304 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 ZNF137PP52743 207 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 ARPC4P59998 168 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 ZNF816Q0VGE8 651 aaPredicted RBP15.97■□□□□ 0.15
COL9A3-204ENST00000463487 KRTAP24-1Q3LI83 254 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 CAPSLQ8WWF8 208 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 C6orf62Q9GZU0 229 aaPredicted RBP15.97■□□□□ 0.15
COL9A3-204ENST00000463487 PIPOXQ9P0Z9 390 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 OR1A1Q9P1Q5 309 aa15.97■□□□□ 0.15
COL9A3-204ENST00000463487 CUBNO60494 3623 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 RAB29O14966 203 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 SLC31A2O15432 143 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 FAM106CPP0CH98 169 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 PAX6P26367 422 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 DHRS7BQ6IAN0 325 aaPredicted RBP15.96■□□□□ 0.15
COL9A3-204ENST00000463487 CNIH2Q6PI25 160 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 TGIF2LXQ8IUE1 241 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 DTX3Q8N9I9 347 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 BEST4Q8NFU0 473 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 MCFD2Q8NI22 146 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 AKR1E2Q96JD6 320 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 S1PR3Q99500 378 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 C19orf24Q9BVV8 132 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 EXTL2Q9UBQ6 330 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 TCF19Q9Y242 345 aa15.96■□□□□ 0.15
COL9A3-204ENST00000463487 TRBV6-7A0A0A0MS04 114 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 FAM181BA6NEQ2 426 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 SSX5O60225 188 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 ZNF134P52741 427 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 LY6EQ16553 131 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 IGSF11Q5DX21 431 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 FAM53AQ6NSI3 398 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 FAM71F2Q6NXP2 309 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 C5orf24Q7Z6I8 188 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 HOGA1Q86XE5 327 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 RTN4IP1Q8WWV3 396 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 GCDHQ92947 438 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 SCPEP1Q9HB40 452 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 RDH8Q9NYR8 311 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 RABL2AQ9UBK7 228 aaPredicted RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 ANXA10Q9UJ72 324 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 ZNF221Q9UK13 617 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 RABL2BQ9UNT1 228 aa15.95■□□□□ 0.14
COL9A3-204ENST00000463487 RBM7Q9Y580 266 aaKnown RBP15.95■□□□□ 0.14
COL9A3-204ENST00000463487 IGKV1-6A0A0C4DH72 117 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 TIMM23O14925 209 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 LANCL1O43813 399 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 HERPUD1Q15011 391 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 C16orf82Q7Z2V1 217 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 MOB3BQ86TA1 216 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 SNX29P2Q8IUI4 249 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 ST6GALNAC6Q969X2 333 aa15.94■□□□□ 0.14
COL9A3-204ENST00000463487 SLIRPQ9GZT3 109 aaKnown RBP15.94■□□□□ 0.14
COL9A3-204ENST00000463487 IGHV1-3A0A0C4DH29 117 aa15.93■□□□□ 0.14
COL9A3-204ENST00000463487 A0A1W2PPI3 338 aa15.93■□□□□ 0.14
COL9A3-204ENST00000463487 SULT1C2O00338 296 aa15.93■□□□□ 0.14
COL9A3-204ENST00000463487 ST8SIA5O15466 376 aa15.93■□□□□ 0.14
COL9A3-204ENST00000463487 REG1BP48304 166 aa15.93■□□□□ 0.14
COL9A3-204ENST00000463487 RAB13P51153 203 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms