RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 GPX5O75715 221 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 PPIAL4GP0DN37 164 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 GLRA1P23415 457 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 PTBP1P26599 531 aaKnown RBP eCLIP5.14□□□□□ -1.59
USP40-202ENST00000409945 TGFBR1P36897 503 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 CFHR2P36980 270 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 RORCP51449 518 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 GPM6AP51674 278 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 BDH1Q02338 343 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 ZNF154Q13106 437 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 OXA1LQ15070 435 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 SMIM21Q3B7S5 101 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 SPRNQ5BIV9 151 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 LIPKQ5VXJ0 399 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 OR5P3Q8WZ94 311 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 CPNE2Q96FN4 548 aaPredicted RBP5.14□□□□□ -1.59
USP40-202ENST00000409945 COMMD4Q9H0A8 199 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 MMP28Q9H239 520 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 RASL12Q9NYN1 266 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 COPS3Q9UNS2 423 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 EXOGQ9Y2C4 368 aaKnown RBP5.14□□□□□ -1.59
USP40-202ENST00000409945 GSTK1Q9Y2Q3 226 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 INSIG2Q9Y5U4 225 aa5.14□□□□□ -1.59
USP40-202ENST00000409945 A0A087WYN8 130 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF732B4DXR9 585 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 UPK1BO75841 260 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 IGLV2-11P01706 119 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 LIMS3P0CW19 117 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 LIMS4P0CW20 117 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 FGF9P31371 208 aaPredicted RBP5.13□□□□□ -1.59
USP40-202ENST00000409945 CD80P33681 288 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 PRRX1P54821 245 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GPR50Q13585 617 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GPR157Q5UAW9 335 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 TEX36Q5VZQ5 186 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 WDR25Q64LD2 544 aaPredicted RBP5.13□□□□□ -1.59
USP40-202ENST00000409945 WDR82Q6UXN9 313 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 TMPRSS11AQ6ZMR5 421 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 C5orf24Q7Z6I8 188 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 STPG4Q8N801 248 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 PP6455Q8WZ26 134 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 CEP19Q96LK0 163 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 KCTD7Q96MP8 289 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 CCDC32Q9BV29 185 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GSN-AS1Q9NRJ2 163 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 KAAG1Q9UBP8 84 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 MRM2Q9UI43 246 aaKnown RBP5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF580Q9UK33 172 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 NUP50Q9UKX7 468 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 SLC22A13Q9Y226 551 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 WNK2Q9Y3S1 2297 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 IGHV2-70DA0A0C4DH43 119 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 SERTM2A0A1B0GWG4 89 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 SRRM5B3KS81 715 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 J3QLW9 94 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 NXPH2O95156 264 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 LHBP01229 141 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GYPAP02724 150 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 TTRP02766 147 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF19P17023 458 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ACKR3P25106 362 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 PMELP40967 661 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GABRA2P47869 451 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 OR3A1P47881 315 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 DEFA1P59665 94 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 DEFA3P59666 94 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 RPL36AP83881 106 aaKnown RBP5.13□□□□□ -1.59
USP40-202ENST00000409945 TP53I3Q53FA7 332 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 CD200R1LQ6Q8B3 271 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF826PQ6ZT77 177 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 CATSPERDQ86XM0 798 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF676Q8N7Q3 588 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF485Q8NCK3 441 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 SPATA3Q8NHX4 192 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 AP3S1Q92572 193 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 SLC25A46Q96AG3 418 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 BORCS8Q96FH0 119 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 TLNRD1Q9H1K6 362 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 RNF167Q9H6Y7 350 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 TXNL4BQ9NX01 149 aaKnown RBP5.13□□□□□ -1.59
USP40-202ENST00000409945 ZNF319Q9P2F9 582 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 GLS2Q9UI32 602 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 HHLA2Q9UM44 414 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 V9GYS6 101 aa5.13□□□□□ -1.59
USP40-202ENST00000409945 ATRQ13535 2644 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 KIR2DS1A0A191URI9 304 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 TRDV1A0A1B0GX56 115 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 A0A1W2PN81 502 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 FUOMA2VDF0 154 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 C5orf63A6NC05 138 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 J3QRE1 110 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 J3QT63 122 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 PTTG1O95997 202 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 CD2P06729 351 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 PRKACBP22694 351 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 BMI1P35226 326 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 CHRNA7P36544 502 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 RBP2P50120 134 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 BCAP31P51572 246 aa5.12□□□□□ -1.59
USP40-202ENST00000409945 ATP1B3P54709 279 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms