RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ACSM6Q6P461 480 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 TXN2Q99757 166 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 IGHV1-18A0A0C4DH31 117 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 SPINK2P20155 84 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 OPRK1P41145 380 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 FAM27E3Q08E93 113 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 ZNF79Q15937 498 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 DNM1P46Q6ZS02 220 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 OSR1Q8TAX0 266 aaPredicted RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 C19orf24Q9BVV8 132 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 PITX3O75364 302 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 MMP7P09237 267 aaPredicted RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 C19orf12Q9NSK7 152 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 SNRNP70P08621 437 aaKnown RBP11.64□□□□□ -0.55
LDLR-201ENST00000252444 PI3P19957 117 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 PDCD1Q15116 288 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 GVQW1Q8N7I0 195 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 TCEAL7Q9BRU2 100 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 CHODLQ9H9P2 273 aa11.64□□□□□ -0.55
LDLR-201ENST00000252444 CEACAM8P31997 349 aaPredicted RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 NKX2-5P52952 324 aaPredicted RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 SFT2D1Q8WV19 159 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 SSBP3Q9BWW4 388 aaPredicted RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 NKX6-2Q9C056 277 aaPredicted RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 ADAM11O75078 769 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 MAGEB1P43366 347 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 ALKAL2Q6UX46 152 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 TECRQ9NZ01 308 aaKnown RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 SDK1Q7Z5N4 2213 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 OR5G3P0C626 314 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 CLLU1Q5K131 121 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 TMEM104Q8NE00 496 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 FAM168AQ92567 244 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 WDR89Q96FK6 387 aaPredicted RBP11.63□□□□□ -0.55
LDLR-201ENST00000252444 IGHV3OR15-7A0A075B7D8 119 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 EFNA2O43921 213 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 THBDP07204 575 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 CD37P11049 281 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 AKR1C3P42330 323 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 PSG7Q13046 419 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 OR2T10Q8NGZ9 312 aa11.63□□□□□ -0.55
LDLR-201ENST00000252444 KCNAB3O43448 404 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 EFNB2P52799 333 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 OR4C13Q8NGP0 309 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 KCNK7Q9Y2U2 307 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 IGHV3-43A0A0B4J1X8 118 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 DEFB108AA8MXU0 73 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 IGHV3-43DP0DP04 118 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 PHYHD1Q5SRE7 291 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 Q8WTZ3 238 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 TMEM50BP56557 158 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 SAMD13Q5VXD3 122 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 FAM89BQ8N5H3 189 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 RPS10P5Q9NQ39 176 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 MMP26Q9NRE1 261 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 OR51B2Q9Y5P1 312 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 RPL27AP46776 148 aaKnown RBP11.62□□□□□ -0.55
LDLR-201ENST00000252444 PERPQ96FX8 193 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 SMCO4Q9NRQ5 59 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 KIF26AQ9ULI4 1882 aaPredicted RBP11.62□□□□□ -0.55
LDLR-201ENST00000252444 DVL1O14640 695 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 SSX5O60225 188 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 DVL1P1P54792 670 aaPredicted RBP11.62□□□□□ -0.55
LDLR-201ENST00000252444 ZNF146Q15072 292 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 COX19Q49B96 90 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 OVCH2Q7RTZ1 564 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 SERTAD4Q9NUC0 356 aa11.62□□□□□ -0.55
LDLR-201ENST00000252444 OTX1P32242 354 aaPredicted RBP11.61□□□□□ -0.55
LDLR-201ENST00000252444 S100A12P80511 92 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 DPF1Q92782 380 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 RTN4RQ9BZR6 473 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 FANCMQ8IYD8 2048 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 TRBV6-6A0A0A6YYG2 114 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 IGKV1D-43A0A0B4J1Z2 117 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 C10orf142B7Z368 130 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 HLA-GP17693 338 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 ASPHD2Q6ICH7 369 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 FAM71F2Q6NXP2 309 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 ZNF649Q9BS31 505 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 RSRP1Q9BUV0 290 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 GGACTQ9BVM4 153 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 CCDC88CQ9P219 2028 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 PTHLHP12272 177 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 SLC25A16P16260 332 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 NPY1RP25929 384 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 EFNA4P52798 201 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 SERF2P84101 59 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 ZNF154Q13106 437 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 OR52B4Q8NGK2 314 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 KBTBD11-OT1A0A1B0GTJ5 212 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 RBFOX2O43251 390 aaKnown RBP eCLIP11.61□□□□□ -0.55
LDLR-201ENST00000252444 ELLP55199 621 aaPredicted RBP11.61□□□□□ -0.55
LDLR-201ENST00000252444 RAB32Q13637 225 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 FAM74A3Q4VXF1 159 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 KHDC3LQ587J8 217 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 KHDC1LQ5JSQ8 128 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 LINC01560Q8TB33 94 aa11.61□□□□□ -0.55
LDLR-201ENST00000252444 UBE2L5PA0A1B0GUS4 154 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 YPEL1O60688 119 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 NAT1P18440 290 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms