RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SNX4O95219 450 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 RPSAP08865 295 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 GIMD1P0DJR0 217 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 CCT6AP40227 531 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 GCLMP48507 274 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 ACTBP60709 375 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 DYNLL1P63167 89 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 ACTG1P63261 375 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 PRDX1Q06830 199 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 RAB11BQ15907 218 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TMEM31Q5JXX7 168 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 HES3Q5TGS1 186 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TMEM42Q69YG0 159 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 SPATA8Q6RVD6 105 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 CLEC20AQ6ZU45 233 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 SLC35D2Q76EJ3 337 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 SLC36A1Q7Z2H8 476 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 MRPL21Q7Z2W9 205 aaKnown RBP0.06□□□□□ -2.4
VPS13C-205ENST00000558088 DOLPP1Q86YN1 238 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 DYNAPQ8N1N2 210 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 PDCL2Q8N4E4 241 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 BBOF1Q8ND07 529 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 OR9I1Q8NGQ6 314 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 GPX8Q8TED1 209 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 CDKL2Q92772 493 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 PITX2Q99697 317 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 CHRNA10Q9GZZ6 450 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 GOLPH3Q9H4A6 298 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 MED9Q9NWA0 146 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 SDHAF2Q9NX18 166 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 TECTAO75443 2155 aa0.06□□□□□ -2.4
VPS13C-205ENST00000558088 ATRNO75882 1429 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 INTS1Q8N201 2190 aaKnown RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 RTTNQ86VV8 2226 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 MEIKINA0A087WXM9 373 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 GRIFINA4D1Z8 144 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 J3QLI3 93 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 K7EN84 100 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 PSMD11O00231 422 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 GEMIN2O14893 280 aaKnown RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 CDK9P50750 372 aaKnown RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 CLDN18P56856 261 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 TSPEAR-AS2P59090 65 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 GBE1Q04446 702 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 DRAM2Q6UX65 266 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF705AQ6ZN79 300 aaPredicted RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 COMMD1Q8N668 190 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 FBXO36Q8NEA4 188 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 GALMQ96C23 342 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 ZMYND19Q96E35 227 aaPredicted RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 SLC35G5Q96KT7 338 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF396Q96N95 335 aaPredicted RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 COPS4Q9BT78 406 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 DOHHQ9BU89 302 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 ZNF471Q9BX82 626 aaPredicted RBP0.05□□□□□ -2.4
VPS13C-205ENST00000558088 SUCNR1Q9BXA5 334 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 VCX3BQ9H321 246 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 NRBP2Q9NSY0 501 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 DNAJC12Q9UKB3 198 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 HHLA3Q9XRX5 114 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 V9GYY9 64 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 TNIKQ9UKE5 1360 aa0.05□□□□□ -2.4
VPS13C-205ENST00000558088 ARFGEF3Q5TH69 2177 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 A0A1W2PQD3 144 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ANKRD20A5PA0PJZ0 165 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 CASQ2O14958 399 aaPredicted RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 GATCO43716 136 aaKnown RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ORC5O43913 435 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 IGHV3-30-3P0DP02 117 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ORM2P19652 201 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 CRHBPP24387 322 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 IVDP26440 423 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 CSKP41240 450 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 RANBP1P43487 201 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 RAB38P57729 211 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 PSMC5P62195 406 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 XRCC4Q13426 336 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 SPATA31B1PQ5VZV4 182 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 FAM43BQ6ZT52 329 aaPredicted RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 C7orf65Q6ZTY9 151 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ARHGAP18Q8N392 663 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 OR11L1Q8NGX0 322 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ASB17Q8WXJ9 295 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 KIAA1143Q96AT1 154 aaPredicted RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 BIRC8Q96P09 236 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 ACBD6Q9BR61 282 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 MED18Q9BUE0 208 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 SPRR2GQ9BYE4 73 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 EXO5Q9H790 373 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 RHBDD3Q9Y3P4 386 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 PCDH15Q96QU1 1955 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 NCOA6Q14686 2063 aaPredicted RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 LAMB4A4D0S4 1761 aa0.04□□□□□ -2.4
VPS13C-205ENST00000558088 BAZ2BQ9UIF8 2168 aaKnown RBP0.04□□□□□ -2.4
VPS13C-205ENST00000558088 KDM5BQ9UGL1 1544 aa0.03□□□□□ -2.4
VPS13C-205ENST00000558088 MGAT4DA6NG13 374 aa0.03□□□□□ -2.4
VPS13C-205ENST00000558088 HMSDA8MTL9 139 aa0.03□□□□□ -2.4
VPS13C-205ENST00000558088 ZMPSTE24O75844 475 aa0.03□□□□□ -2.4
VPS13C-205ENST00000558088 IGHV1-69P01742 117 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms