RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RHOVQ96L33 236 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 MTCH1Q9NZJ7 389 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 hCG_38984A0A1B0GV85 526 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 TRDCB7Z8K6 153 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 LILRA1O75019 489 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 DTYMKP23919 212 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 HPSE2Q8WWQ2 592 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 GNPNAT1Q96EK6 184 aaPredicted RBP12.74□□□□□ -0.37
CUX1-215ENST00000556210 GGACTQ9BVM4 153 aa12.74□□□□□ -0.37
CUX1-215ENST00000556210 A0A1W2PPV4 95 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 C5orf52A6NGY3 159 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 RPL36A-HNRNPH2H7BZ11 118 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 WNT9BO14905 357 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 CTXN2P0C2S0 81 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 CTAG1AP78358 180 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 RSPO1Q2MKA7 263 aaPredicted RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 Q3ZCU0 254 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 RAB39BQ96DA2 213 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 MEGF10Q96KG7 1140 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 ZPBPQ9BS86 351 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 TRBV6-7A0A0A0MS04 114 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 H0YL77 283 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 CSRP1P21291 193 aaKnown RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 ZFP36L1Q07352 338 aaKnown RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 IL13RA2Q14627 380 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 ZNF343Q6P1L6 599 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 MRPL41Q8IXM3 137 aaKnown RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 GALMQ96C23 342 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 DOK5Q9P104 306 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 ZNF391Q9UJN7 358 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 IGKV1D-13A0A0B4J2D9 117 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 CYTIPO60759 359 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 IGKV1-13P0DP09 117 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 CATR1Q13166 79 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 SRSF6Q13247 344 aaKnown RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 ZNF787Q6DD87 383 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 GGNQ86UU5 652 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 C1orf147Q96MC9 270 aaPredicted RBP12.73□□□□□ -0.37
CUX1-215ENST00000556210 SLC25A22Q9H936 323 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 GTF3C1Q12789 2109 aa12.73□□□□□ -0.37
CUX1-215ENST00000556210 IGHV3OR15-7A0A075B7D8 119 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 LOC102723996A0A087X1L8 192 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 OR5H1A6NKK0 313 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 B4E171 279 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 VDAC1P21796 283 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 TSPAN7P41732 249 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 RNPS1Q15287 305 aaKnown RBP12.72□□□□□ -0.37
CUX1-215ENST00000556210 MSMO1Q15800 293 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 FBXW9Q5XUX1 488 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 TMEM252Q8N6L7 170 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 ABHD14BQ96IU4 210 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 DENND4AQ7Z401 1863 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 DANCRP0C864 163 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 G6PCP35575 357 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 ERVK-16P61578 105 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 PDLIM3Q53GG5 364 aaPredicted RBP12.72□□□□□ -0.37
CUX1-215ENST00000556210 PRAMEF5Q5TYX0 476 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 TMEM211Q6ICI0 200 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 FAM210BQ96KR6 192 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 GPR61Q9BZJ8 451 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 PROK2Q9HC23 129 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 TAAR3PQ9P1P4 343 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 CD5P06127 495 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 NDUFB7P17568 137 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 PMELP40967 661 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 TMEM187Q14656 261 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 CEACAM21Q3KPI0 293 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 EML6Q6ZMW3 1958 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 SEC14L6B5MCN3 397 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 CYB561D1Q8N8Q1 229 aa12.72□□□□□ -0.37
CUX1-215ENST00000556210 FOXD3Q9UJU5 478 aaPredicted RBP12.72□□□□□ -0.37
CUX1-215ENST00000556210 TRGC2P03986 189 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 FAM185AQ8N0U4 392 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 LIME1Q9H400 295 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 ZNF703Q9H7S9 590 aaPredicted RBP12.71□□□□□ -0.37
CUX1-215ENST00000556210 TP53TG5Q9Y2B4 290 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 MUC6Q6W4X9 2439 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 DBX1A6NMT0 343 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 UBE2CO00762 179 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 GATCO43716 136 aaKnown RBP12.71□□□□□ -0.37
CUX1-215ENST00000556210 NEURL1O76050 574 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 KCNMB1Q16558 191 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 ZNF600Q6ZNG1 722 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 OR52L2PQ8NGH6 319 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 C10orf35Q96D05 121 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 SNX22Q96L94 193 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 SEMA5BQ9P283 1151 aa12.71□□□□□ -0.37
CUX1-215ENST00000556210 ZNF705FA8MVS1 300 aaPredicted RBP12.71□□□□□ -0.38
CUX1-215ENST00000556210 FCGR3BO75015 233 aa12.71□□□□□ -0.38
CUX1-215ENST00000556210 ZNF705DP0CH99 300 aaPredicted RBP12.71□□□□□ -0.38
CUX1-215ENST00000556210 ZNF705BP0CI00 300 aaPredicted RBP12.71□□□□□ -0.38
CUX1-215ENST00000556210 KLF2Q9Y5W3 355 aaPredicted RBP12.71□□□□□ -0.38
CUX1-215ENST00000556210 CREBBPQ92793 2442 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 A0A087X0M5 115 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 IGLV3-32A0A0A0MS00 114 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 A0A1B0GX30 115 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 LRP5LA4QPB2 252 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 SPINT2O43291 252 aa12.7□□□□□ -0.38
CUX1-215ENST00000556210 SNRPCP09234 159 aaKnown RBP12.7□□□□□ -0.38
CUX1-215ENST00000556210 FGF12P61328 243 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms