RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 IFT46Q9NQC8 304 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 IFNKQ9P0W0 207 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 NOSIPQ9Y314 301 aaKnown RBP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 PUS1Q9Y606 427 aaKnown RBP eCLIP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 CLUHO75153 1309 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 ABCB11O95342 1321 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 POLR3AO14802 1390 aaPredicted RBP0.77□□□□□ -2.29
SCFD1-216ENST00000555550 PLCH2O75038 1416 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 COL6A6A6NMZ7 2263 aa0.77□□□□□ -2.29
SCFD1-216ENST00000555550 USP24Q9UPU5 2620 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TRPM3Q9HCF6 1732 aaPredicted RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 DNMT1P26358 1616 aaKnown RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 CEP170Q5SW79 1584 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 NRCAMQ92823 1304 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TRGV2A0A075B6R0 118 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 IGHV2-26A0A0B4J1V2 119 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 PGPA6NDG6 321 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 FAM183AA6NL82 134 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 ITGB1BP1O14713 200 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 CDK14O94921 469 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 LDOC1O95751 146 aaPredicted RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 CASQ1P31415 396 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TTPAP49638 278 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 XKP51811 444 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 STC1P52823 247 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TSPAN5P62079 268 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 PRDX1Q06830 199 aaKnown RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 DMTNQ08495 405 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 MGAT3Q09327 533 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 PMS2P3Q13401 168 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 APOFQ13790 326 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TRAM1Q15629 374 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 GOLGA7BQ2TAP0 167 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TMEM249Q2WGJ8 235 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 HSP90AA4PQ58FG1 418 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 LAMTOR1Q6IAA8 161 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 VN1R4Q7Z5H5 301 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 CD302Q8IX05 232 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 BOD1L2Q8IYS8 172 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TMEM156Q8N614 296 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 YIPF7Q8N8F6 280 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 CLHC1Q8NHS4 586 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 DOK4Q8TEW6 326 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 PDCD6IPQ8WUM4 868 aaKnown RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 ZMYND19Q96E35 227 aaPredicted RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 VAT1Q99536 393 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 NAA38Q9BRA0 125 aaKnown RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 BEX2Q9BXY8 128 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 EBPLQ9BY08 206 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 POTEKPQ9BYX7 375 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 ALX4Q9H161 411 aaPredicted RBP0.76□□□□□ -2.29
SCFD1-216ENST00000555550 C16orf95Q9H693 158 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TMBIM4Q9HC24 238 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 NCKAP5O14513 1909 aa0.76□□□□□ -2.29
SCFD1-216ENST00000555550 TRAV8-3A0A0A6YYJ7 113 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 A0A0G2JQZ4 141 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 IGSF23A1L1A6 192 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 RAB19A4D1S5 217 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 FABP12A6NFH5 140 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 ARGFXA6NJG6 315 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 MPZL2O60487 215 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 ADAP1O75689 374 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 LTAP01374 205 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 KDELR2P33947 212 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 EVI2BP34910 448 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 CRATP43155 626 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 VSNL1P62760 191 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 RAB31Q13636 194 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 MMDQ15546 238 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 USF2Q15853 346 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-216ENST00000555550 RBM48Q5RL73 367 aaKnown RBP0.75□□□□□ -2.29
SCFD1-216ENST00000555550 ELP2Q6IA86 826 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 Q6ZRN7 208 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-216ENST00000555550 RIBC1Q8N443 379 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-216ENST00000555550 C10orf126Q8N4M7 172 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 DYNC2LI1Q8TCX1 351 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 REEP6Q96HR9 211 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 ZNF514Q96K75 400 aaPredicted RBP0.75□□□□□ -2.29
SCFD1-216ENST00000555550 ATP6V1G3Q96LB4 118 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 APOL4Q9BPW4 351 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 SPZ1Q9BXG8 430 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 SLC25A31Q9H0C2 315 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 TAS2R13Q9NYV9 303 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 DNAJC27Q9NZQ0 273 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 BTRCQ9Y297 605 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 MINOS1-NBL1R4GNA1 71 aa0.75□□□□□ -2.29
SCFD1-216ENST00000555550 LRPPRCP42704 1394 aaKnown RBP0.74□□□□□ -2.29
SCFD1-216ENST00000555550 MAP3K5Q99683 1374 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 ATAD5Q96QE3 1844 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 IGHV3OR15-7A0A075B7D8 119 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 MUC21A0A0G2JKD1 596 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 MUC21A0A140T8X8 626 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 A8MWP6 167 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 H3BP45 60 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 GPR171O14626 319 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 TOX3O15405 576 aaPredicted RBP0.74□□□□□ -2.29
SCFD1-216ENST00000555550 CRXO43186 299 aaPredicted RBP0.74□□□□□ -2.29
SCFD1-216ENST00000555550 COCHO43405 550 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 SLC2A1P11166 492 aa0.74□□□□□ -2.29
SCFD1-216ENST00000555550 DEKP35659 375 aaKnown RBP0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms