RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 GHITMQ9H3K2 345 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 IMPAD1Q9NX62 359 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 CHCHD3Q9NX63 227 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 GNG12Q9UBI6 72 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 ING4Q9UNL4 249 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 AP4S1Q9Y587 144 aa13.71□□□□□ -0.21
CLSTN3-214ENST00000542663 A8MZ25 164 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 RPSAP08865 295 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 LGALS1P09382 135 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 OR8U9P0C7N5 309 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 SOX2P48431 317 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 SNRPGP62308 76 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 NDPQ00604 133 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 MPV17LQ2QL34 196 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 SYT6Q5T7P8 510 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 ODF3L1Q8IXM7 274 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 OR1L1Q8NH94 360 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 NEK7Q8TDX7 302 aa13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 NKX1-2Q9UD57 310 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-214ENST00000542663 NBR2O15453 112 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 SPINT2O43291 252 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 HBZP02008 142 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 CSTBP04080 98 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 CRIP2P52943 208 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 ADARB1P78563 741 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 C5orf64Q2M2E5 130 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 MEDAGQ5VYS4 303 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 LYPD6Q86Y78 171 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 PRR18Q8N4B5 295 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 OR4K15Q8NH41 348 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 CYYR1Q96J86 154 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 NABP2Q9BQ15 211 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 KRTAP17-1Q9BYP8 105 aa13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 RCC2Q9P258 522 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 MRPS28Q9Y2Q9 187 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-214ENST00000542663 A0A1W2PN81 502 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 NDUFA3O95167 84 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 ZNF93P35789 620 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 CHRNA7P36544 502 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 GTF2A1P52655 376 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 PITPNAQ00169 270 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 ECSCRQ19T08 205 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 TMEM30BQ3MIR4 351 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 MORN2Q502X0 79 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 STEAP3Q658P3 488 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 LIN54Q6MZP7 749 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 GAPTQ8N292 157 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 NPBQ8NG41 125 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 MRPL48Q96GC5 212 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 ZNF251Q9BRH9 671 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 MRPL20Q9BYC9 149 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 ERVK13-1Q9NX77 482 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 TRAPPC2LQ9UL33 140 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 ALMS1Q8TCU4 4167 aa13.68□□□□□ -0.22
CLSTN3-214ENST00000542663 SAC3D1A6NKF1 404 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 IGLV1-51P01701 117 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 RCC1P18754 421 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 MRPL28Q13084 256 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 GNMTQ14749 295 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 DDI2Q5TDH0 399 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 C5orf24Q7Z6I8 188 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 ORAI1Q96D31 301 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 OR4C12Q96R67 309 aa13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 FOXA2Q9Y261 457 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-214ENST00000542663 HSPA12AO43301 675 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 IGHV3-11P01762 117 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 EGR2P11161 476 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 FCGR1AP12314 374 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 GABRB1P18505 474 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 SLC22A6Q4U2R8 563 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 C6orf183Q5T699 404 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 XAF1Q6GPH4 301 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 STX19Q8N4C7 294 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 TMEM106AQ96A25 262 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 CENPNQ96H22 339 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 SPATA25Q9BR10 227 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 TMEM138Q9NPI0 162 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 NUBP2Q9Y5Y2 271 aa13.66□□□□□ -0.22
CLSTN3-214ENST00000542663 HSPB1P04792 205 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 ALPLP05186 524 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 GTF2F2P13984 249 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 GBX2P52951 348 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 HAGHQ16775 308 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 LRRC36Q1X8D7 754 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 ZNF833PQ6ZTB9 187 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 OR52L2PQ8NGH6 319 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 S100A13Q99584 98 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 ABHD14AQ9BUJ0 271 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 CST11Q9H112 138 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 TAF9BQ9HBM6 251 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 RAB9BQ9NP90 201 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 OR2S2Q9NQN1 319 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 PAK1IP1Q9NWT1 392 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 ETAA1Q9NY74 926 aa13.65□□□□□ -0.22
CLSTN3-214ENST00000542663 SNTNA6NMZ2 147 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 MCRIP1C9JLW8 97 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 ZNF780AO75290 641 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 SC5DO75845 299 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 CD2P06729 351 aa13.64□□□□□ -0.23
CLSTN3-214ENST00000542663 BDKRB2P30411 391 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms