RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ZNF251Q9BRH9 671 aa6.15□□□□□ -1.42
CD44-232ENST00000531118 SLA2Q9H6Q3 261 aa6.15□□□□□ -1.42
CD44-232ENST00000531118 DHDHQ9UQ10 334 aa6.15□□□□□ -1.42
CD44-232ENST00000531118 SNX5Q9Y5X3 404 aa6.15□□□□□ -1.42
CD44-232ENST00000531118 TMEM14AQ9Y6G1 99 aa6.15□□□□□ -1.42
CD44-232ENST00000531118 TRAV24A0A0B4J272 114 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 ZNF785A8K8V0 405 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 H3BN98 237 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 DYNC1I1O14576 645 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 DEGS1O15121 323 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 SNX3O60493 162 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 DCTN3O75935 186 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 KRT36O76013 467 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 OR2A4O95047 310 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 TRGV3P03979 118 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 CSTBP04080 98 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 PRDX6P30041 224 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 BMI1P35226 326 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 MECP2P51608 486 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 MNAT1P51948 309 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 HMGA2P52926 109 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 GNGT1P63211 74 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 PPP1R8Q12972 351 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 MOGAT2Q3SYC2 334 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 Q3ZCU0 254 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 ACTBL2Q562R1 376 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 ZNF660Q6AZW8 331 aaPredicted RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 ZNF322Q6U7Q0 402 aaPredicted RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 UNQ5815/PRO19632Q6UWF5 114 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 HACD2Q6Y1H2 254 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 TMEM179BQ7Z7N9 219 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 TMEM217Q8N7C4 229 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 MAPKAPK5-AS1Q8N8E1 139 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 ZNF439Q8NDP4 499 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 OR52M1Q8NGK5 317 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 PP6455Q8WZ26 134 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 SPSB1Q96BD6 273 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 RITA1Q96K30 269 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 OPALINQ96PE5 141 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 CNN2Q99439 309 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 APOL4Q9BPW4 351 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 NIPSNAP1Q9BPW8 284 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 FAM103A1Q9BTL3 118 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 GORASP2Q9H8Y8 452 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 NEK6Q9HC98 313 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 FAM118AQ9NWS6 357 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 NDE1Q9NXR1 346 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 CNOT2Q9NZN8 540 aaKnown RBP6.14□□□□□ -1.43
CD44-232ENST00000531118 ERGIC3Q9Y282 383 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 TP53TG1Q9Y2A0 90 aa6.14□□□□□ -1.43
CD44-232ENST00000531118 LOC102724200A0A096LPH7 203 aaPredicted RBP6.13□□□□□ -1.43
CD44-232ENST00000531118 C13orf42A0A1B0GVH6 325 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.13□□□□□ -1.43
CD44-232ENST00000531118 C15orf65H3BRN8 121 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 RTL8CO15255 209 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 XRCC3O43542 346 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 LANCL1O43813 399 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 SERPINA3P01011 423 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 EGR2P11161 476 aaPredicted RBP6.13□□□□□ -1.43
CD44-232ENST00000531118 ATF1P18846 271 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 PRKACBP22694 351 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 MAGEA2P43356 314 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 KCNJ3P48549 501 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 CXCR4P61073 352 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 CX3CL1P78423 397 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 DEFA5Q01523 94 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 DYRK1AQ13627 763 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 DEFB135Q30KP9 77 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 LIN54Q6MZP7 749 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 PPP1R27Q86WC6 154 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 GVQW1Q8N7I0 195 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 CCDC54Q8NEL0 328 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 NPBQ8NG41 125 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 DYNLRB2Q8TF09 96 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 C10orf35Q96D05 121 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 RNF183Q96D59 192 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 ADAT3Q96EY9 351 aaPredicted RBP6.13□□□□□ -1.43
CD44-232ENST00000531118 MRPL20Q9BYC9 149 aaKnown RBP6.13□□□□□ -1.43
CD44-232ENST00000531118 BARHL1Q9BZE3 327 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 RHOFQ9HBH0 211 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 SPAG4Q9NPE6 437 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 ZC4H2Q9NQZ6 224 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 MAGEL2Q9UJ55 1249 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 GAB2Q9UQC2 676 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 ARL2BPQ9Y2Y0 163 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 NUBP2Q9Y5Y2 271 aa6.13□□□□□ -1.43
CD44-232ENST00000531118 KRTAP9-6A0A140TA67 174 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 ARPC2O15144 300 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 RPP14O95059 124 aaKnown RBP6.12□□□□□ -1.43
CD44-232ENST00000531118 TRBV12-3P01733 135 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 PSME3P61289 254 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 TMEM267Q0VDI3 215 aaPredicted RBP6.12□□□□□ -1.43
CD44-232ENST00000531118 IL13RA2Q14627 380 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 GUCA2BQ16661 112 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 RPEL1Q2QD12 228 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 UTS2BQ765I0 119 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 SLC35F2Q8IXU6 374 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 SAXO1Q8IYX7 474 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 POC5Q8NA72 575 aa6.12□□□□□ -1.43
CD44-232ENST00000531118 OR10G2Q8NGC3 310 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms