RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 AHDC1Q5TGY3 1603 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-209ENST00000472056 FAM221AA4D161 298 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 RBFOX2O43251 390 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL6A3-209ENST00000472056 TMEM108Q6UXF1 575 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 KLF3P57682 345 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-209ENST00000472056 CALHM1Q8IU99 346 aa11.73□□□□□ -0.53
COL6A3-209ENST00000472056 IGF2P01344 180 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 GABRG2P18507 467 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 NMUP48645 174 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 Q6ZNB5 142 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 SLC25A40Q8TBP6 338 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 SPRY1O43609 319 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 SMIM13P0DJ93 91 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 POLR2GP62487 172 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 GGACTQ9BVM4 153 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 CREBBPQ92793 2442 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 SBK3P0C264 359 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 RPS11P62280 158 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 PRICKLE4Q2TBC4 344 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 LINC00696Q6ZRV3 163 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 ASB16Q96NS5 453 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 BEND2Q8NDZ0 799 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 NUDT10Q8NFP7 164 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 OR2Z1Q8NG97 314 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 NUDT11Q96G61 164 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 KCNE3Q9Y6H6 103 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 GNG7O60262 68 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 SLC35B1P78383 322 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 LSM10Q969L4 123 aaKnown RBP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 MOB4Q9Y3A3 225 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 FZD5Q13467 585 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 RHNO1Q9BSD3 238 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 PSMG3Q9BT73 122 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 HES7Q9BYE0 225 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 MAP1LC3AQ9H492 121 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 TANC2Q9HCD6 1990 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 A0A0U1RQS6 177 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 NHLRC3Q5JS37 347 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 MRPL52Q86TS9 123 aaKnown RBP11.72□□□□□ -0.53
COL6A3-209ENST00000472056 MIXL1Q9H2W2 232 aa11.72□□□□□ -0.53
COL6A3-209ENST00000472056 K7ESM1 405 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 DAOP14920 347 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 HMGA1P17096 107 aaKnown RBP11.71□□□□□ -0.53
COL6A3-209ENST00000472056 ZNF519Q8TB69 540 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 FBLIM1Q8WUP2 373 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 PRELID3AQ96N28 172 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 ANAPC1Q9H1A4 1944 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 PLXNA3P51805 1871 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 C17orf51A8MQB3 221 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 NPIPB9F8W1W9 429 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 C8orf82Q6P1X6 216 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-209ENST00000472056 ALKBH3Q96Q83 286 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-209ENST00000472056 M0R1B8 84 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 IBA57Q5T440 356 aaKnown RBP11.71□□□□□ -0.53
COL6A3-209ENST00000472056 LINC01465Q8N7H1 131 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 GALNT14Q96FL9 552 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 FGF22Q9HCT0 170 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 KCNE5Q9UJ90 142 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 COL24A1Q17RW2 1714 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 RAB29O14966 203 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 PMELP40967 661 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 CA7P43166 264 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 RAB1BQ9H0U4 201 aa11.71□□□□□ -0.53
COL6A3-209ENST00000472056 IL4P05112 153 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 OR4P4Q8NGL7 312 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 LTB4R2Q9NPC1 389 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 MMP17Q9ULZ9 603 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 PLXND1Q9Y4D7 1925 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 SPINK4O60575 86 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 S1PR2O95136 353 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 SFXN3Q9BWM7 321 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 TUBA4BQ9H853 241 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 ZMIZ1Q9ULJ6 1067 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 CCL26Q9Y258 94 aa11.71□□□□□ -0.54
COL6A3-209ENST00000472056 A0A1W2PNR3 127 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 CYR61O00622 381 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 DNLZQ5SXM8 178 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 MS4A3Q96HJ5 214 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 ISG15P05161 165 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 MUC1P15941 1255 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-209ENST00000472056 SRD5A2P31213 254 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 TMEM50BP56557 158 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 NIT1Q86X76 327 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 SPANXDQ9BXN6 97 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 MFRPQ9BY79 579 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 COL5A3P25940 1745 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-209ENST00000472056 NHSL1Q5SYE7 1610 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 A0A096LPE4 126 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 A0A1W2PPZ6 126 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 ZNF735P0CB33 412 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 FAM157BP0CG42 384 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 RAE1P78406 368 aaKnown RBP11.7□□□□□ -0.54
COL6A3-209ENST00000472056 OR8I2Q8N0Y5 310 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 OR8B3Q8NGG8 313 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 NRSN2Q9GZP1 204 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 MRM2Q9UI43 246 aaKnown RBP11.7□□□□□ -0.54
COL6A3-209ENST00000472056 A0A1B0GV90 55 aa11.7□□□□□ -0.54
COL6A3-209ENST00000472056 ORM2P19652 201 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms