RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 SPACA1Q9HBV2 294 aa17.58■□□□□ 0.4
USP4-208ENST00000464168 VSIG4Q9Y279 399 aa17.58■□□□□ 0.4
USP4-208ENST00000464168 SMAD5-AS1Q9Y6J3 95 aa17.58■□□□□ 0.4
USP4-208ENST00000464168 RYR2Q92736 4967 aa17.58■□□□□ 0.4
USP4-208ENST00000464168 LOC100130705A0A1B0GUX0 176 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 MAGEA13PA6NCF6 341 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 MCRIP1C9JLW8 97 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 LY86O95711 162 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 IGLV1-40P01703 118 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 RCC1P18754 421 aaPredicted RBP17.57■□□□□ 0.4
USP4-208ENST00000464168 ZNF616Q08AN1 781 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 MMDQ15546 238 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 SMN1Q16637 294 aaKnown RBP17.57■□□□□ 0.4
USP4-208ENST00000464168 C6orf183Q5T699 404 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 TMEM65Q6PI78 240 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 OR5B12Q96R08 314 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 RAB9BQ9NP90 201 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 ETAA1Q9NY74 926 aa17.57■□□□□ 0.4
USP4-208ENST00000464168 FAM90A10PA6NDY2 464 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 GPX5O75715 221 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 GNB1P62873 340 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 ADARB1P78563 741 aaKnown RBP17.56■□□□□ 0.4
USP4-208ENST00000464168 GPR176Q14439 515 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 RAB12Q6IQ22 244 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 ZFP1Q6P2D0 407 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 SBSPONQ8IVN8 264 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 MUC7Q8TAX7 377 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 OR51J1Q9H342 316 aa17.56■□□□□ 0.4
USP4-208ENST00000464168 SACSQ9NZJ4 4579 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 TRBV5-5A0A0J9YX44 114 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 ATP6V0E1O15342 81 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 WBP4O75554 376 aaKnown RBP17.55■□□□□ 0.4
USP4-208ENST00000464168 CNTFRP26992 372 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 MORN2Q502X0 79 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 CASC10Q5T4H9 136 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 TMPRSS11AQ6ZMR5 421 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 DCUN1D4Q92564 292 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 GHSRQ92847 366 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 SMIM19Q96E16 107 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 MRPS24Q96EL2 167 aaKnown RBP17.55■□□□□ 0.4
USP4-208ENST00000464168 CYYR1Q96J86 154 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 OR2S2Q9NQN1 319 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 BABAM2Q9NXR7 383 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 PEX16Q9Y5Y5 336 aa17.55■□□□□ 0.4
USP4-208ENST00000464168 TRAV8-7A0A075B6U6 113 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 IGHV7-81A0A0B4J1V7 117 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 LALBAP00709 142 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 HLA-DRB1P01911 266 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 DCKP27707 260 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 RAB9AP51151 201 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 ACTBP60709 375 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 TRAT1Q6PIZ9 186 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 GLIPR1L1Q6UWM5 242 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 ZNF429Q86V71 674 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 ODF3L1Q8IXM7 274 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 MUL1Q969V5 352 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 C9orf16Q9BUW7 83 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 TAF9BQ9HBM6 251 aa17.54■□□□□ 0.4
USP4-208ENST00000464168 MRPS28Q9Y2Q9 187 aaKnown RBP17.54■□□□□ 0.4
USP4-208ENST00000464168 TRAV41A0A0B4J266 112 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 SC5DO75845 299 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 RPS11P62280 158 aaKnown RBP eCLIP17.53■□□□□ 0.4
USP4-208ENST00000464168 GNMTQ14749 295 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 FAM27D1Q5T7N8 215 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 DMKNQ6E0U4 476 aaPredicted RBP17.53■□□□□ 0.4
USP4-208ENST00000464168 C5orf24Q7Z6I8 188 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 MINDY2Q8NBR6 621 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 RCHY1Q96PM5 261 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 MRPL20Q9BYC9 149 aaKnown RBP17.53■□□□□ 0.4
USP4-208ENST00000464168 ANKRD60Q9BZ19 345 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 PARP11Q9NR21 331 aa17.53■□□□□ 0.4
USP4-208ENST00000464168 OVOL1O14753 267 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 CA11O75493 328 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 Q499Y3 187 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 SIGIRRQ6IA17 410 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 OR52L2PQ8NGH6 319 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 NABP2Q9BQ15 211 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 ZNF251Q9BRH9 671 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 ABHD14AQ9BUJ0 271 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 BANF2Q9H503 90 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 ISYNA1Q9NPH2 558 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 MBNL3Q9NUK0 354 aaKnown RBP17.52■□□□□ 0.4
USP4-208ENST00000464168 CKLFQ9UBR5 152 aa17.52■□□□□ 0.4
USP4-208ENST00000464168 UBE2QL1A1L167 161 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 DYNC1I1O14576 645 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 FUT3P21217 361 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 BLVRBP30043 206 aaPredicted RBP17.51■□□□□ 0.39
USP4-208ENST00000464168 PPP1CCP36873 323 aaKnown RBP17.51■□□□□ 0.39
USP4-208ENST00000464168 C5orf64Q2M2E5 130 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 LIN54Q6MZP7 749 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 OVCH2Q7RTZ1 564 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 JAGN1Q8N5M9 183 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 DLX4Q92988 240 aaPredicted RBP17.51■□□□□ 0.39
USP4-208ENST00000464168 RDH12Q96NR8 316 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 SELENOIQ9C0D9 397 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 ALX4Q9H161 411 aaPredicted RBP17.51■□□□□ 0.39
USP4-208ENST00000464168 CLEC2DQ9UHP7 191 aa17.51■□□□□ 0.39
USP4-208ENST00000464168 TRBV5-7A0A0A0MS05 114 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 FAM90A7PA6NKC0 464 aa17.5■□□□□ 0.39
USP4-208ENST00000464168 FAM90A23PA8MXZ1 464 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms