RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 M1APQ8TC57 530 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 CT55Q8WUE5 264 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 OR5P3Q8WZ94 311 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 CPNE4Q96A23 557 aaPredicted RBP6.09□□□□□ -1.43
COL28A1-202ENST00000430711 GPR61Q9BZJ8 451 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 C12orf49Q9H741 205 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 TUBA4BQ9H853 241 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 GNG13Q9P2W3 67 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 ERRFI1Q9UJM3 462 aaPredicted RBP6.09□□□□□ -1.43
COL28A1-202ENST00000430711 PPP1R3CQ9UQK1 317 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 SIT1Q9Y3P8 196 aa6.09□□□□□ -1.43
COL28A1-202ENST00000430711 RELNP78509 3460 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CYTIPO60759 359 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 NEURL1O76050 574 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 FOLR3P41439 243 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ECI1P42126 302 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 GNMTQ14749 295 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 TESK1Q15569 626 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 FAM189A2Q15884 450 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ZNF585BQ52M93 769 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 SPINK9Q5DT21 86 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ATP1A1-AS1Q5TC04 95 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 OR2T2Q6IF00 324 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CCDC54Q8NEL0 328 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 OR1J1Q8NGS3 322 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 FRZBQ92765 325 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 DUSP23Q9BVJ7 150 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 SF3B5Q9BWJ5 86 aaKnown RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 WSB1Q9Y6I7 421 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 MAST4O15021 2626 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 OTOGLQ3ZCN5 2332 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 SIRPB1O00241 398 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 PHOX2AO14813 284 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CYB5BO43169 146 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 RAMP3O60896 148 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 MT-CO3P00414 261 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 P04436 131 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CA6P23280 308 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 EIF2S3P41091 472 aaKnown RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ELLP55199 621 aaPredicted RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CLDN18P56856 261 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 UBE2KP61086 200 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 FGF12P61328 243 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 RTP5Q14D33 572 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 RHEBQ15382 184 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ZNF674Q2M3X9 581 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 IL22RA1Q8N6P7 574 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 WDYHV1Q96HA8 205 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 ELOVL1Q9BW60 279 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 PLEKHF2Q9H8W4 249 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 FOXJ2Q9P0K8 574 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 CACNG5Q9UF02 275 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 TCFL5Q9UL49 500 aa6.08□□□□□ -1.44
COL28A1-202ENST00000430711 MRPS17Q9Y2R5 130 aaKnown RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 NOSIPQ9Y314 301 aaKnown RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 STRAPQ9Y3F4 350 aaKnown RBP6.08□□□□□ -1.44
COL28A1-202ENST00000430711 KNTC1P50748 2209 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 SVEP1Q4LDE5 3571 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 CXorf65A6NEN9 183 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 SS18L1O75177 396 aaPredicted RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 CNOT4O95628 575 aaKnown RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 ZNF16P17020 682 aaPredicted RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RAB11AP62491 216 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 IL11RAQ14626 422 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 ARL6IP1Q15041 203 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 KHDC3LQ587J8 217 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 UTF1Q5T230 341 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RTL6Q6ICC9 239 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 LINC00696Q6ZRV3 163 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 CMTM1Q8IZ96 169 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 CCDC71LQ8N9Z2 235 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 ZNF383Q8NA42 475 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 Q8NFD4 153 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 MALSU1Q96EH3 234 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 PRDM13Q9H4Q3 707 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RNF150Q9ULK6 438 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 PTPRBP23467 1997 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 LOC102723971A0A1B0GUV8 181 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 CD300LBA8K4G0 201 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 C9J4A7 227 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 MRPL33O75394 65 aaKnown RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 TK1P04183 234 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 NR2C1P13056 603 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 TDGF1P13385 188 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 HOXA5P20719 270 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 F2RP25116 425 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 MAS1LP35410 378 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 PMELP40967 661 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 BRWD1-AS2P59051 145 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RAB2AP61019 212 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RPL23AP62750 156 aaKnown RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 VAMP2P63027 116 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 ZNF506Q5JVG8 444 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 Q6ZR03 302 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 NECAP1Q8NC96 275 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 OR10D4PQ8NGN7 298 aa6.07□□□□□ -1.44
COL28A1-202ENST00000430711 INTS12Q96CB8 462 aaKnown RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 RCC1LQ96I51 464 aaKnown RBP6.07□□□□□ -1.44
COL28A1-202ENST00000430711 THOC3Q96J01 351 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms