RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ARGFXA6NJG6 315 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 RNF224P0DH78 156 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 S100GP29377 79 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 DDTP30046 118 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 FOXG1P55316 489 aaPredicted RBP13.94□□□□□ -0.18
SDC4-201ENST00000372733 LILRB2Q8N423 598 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 OR2Y1Q8NGV0 311 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 UBALD1Q8TB05 177 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 MAP1LC3BQ9GZQ8 125 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 SMOC1Q9H4F8 434 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 FREM1Q5H8C1 2179 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 IGKV1-5P01602 117 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 ADIRFQ15847 76 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 NECAP1Q8NC96 275 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 OR4X1Q8NH49 305 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 PSMF1Q92530 271 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 CDH20Q9HBT6 801 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 DEPPQ9NTK1 212 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 GAB2Q9UQC2 676 aa13.94□□□□□ -0.18
SDC4-201ENST00000372733 TRAV24A0A0B4J272 114 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 SMCO3A2RU48 225 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 NGFP01138 241 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 OPN1MWP04001 364 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 OPN1MW2P0DN77 364 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 OPN1MW3P0DN78 364 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 IL2RGP31785 369 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 PKIAP61925 76 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 CLN3Q13286 438 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 IL11RAQ14626 422 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 IGFBP7Q16270 282 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 IFI44Q8TCB0 444 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 PRRG4Q9BZD6 226 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 UFSP2Q9NUQ7 469 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 VAX2Q9UIW0 290 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 PPP1R3CQ9UQK1 317 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 CD300LBA8K4G0 201 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 CYTIPO60759 359 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 LILRA1O75019 489 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 SLC25A6P12236 298 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 ZNF16P17020 682 aaPredicted RBP13.93□□□□□ -0.18
SDC4-201ENST00000372733 REC114Q7Z4M0 266 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 PRR18Q8N4B5 295 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 SGCZQ96LD1 299 aa13.93□□□□□ -0.18
SDC4-201ENST00000372733 PSMG3Q9BT73 122 aaPredicted RBP13.93□□□□□ -0.18
SDC4-201ENST00000372733 TNRC6BQ9UPQ9 1833 aaKnown RBP13.92□□□□□ -0.18
SDC4-201ENST00000372733 A0A087X0M5 115 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 UBE2L5PA0A1B0GUS4 154 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 A0A1B0GX30 115 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 PINLYPA6NC86 204 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 K7ESF4 209 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 GDF1P27539 372 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 SSX9Q7RTT3 188 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 SMIM7Q9BQ49 75 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 TSTD3H0UI37 97 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 HMGB3O15347 200 aaKnown RBP13.92□□□□□ -0.18
SDC4-201ENST00000372733 TGOLN2O43493 480 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 TUBG1P23258 451 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 LRRC75BQ2VPJ9 315 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 TMEM41BQ5BJD5 291 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 SPANXN5Q5MJ07 72 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 C16orf82Q7Z2V1 217 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 MRGPRGQ86SM5 289 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 OR10A7Q8NGE5 316 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 OR10V1Q8NGI7 309 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 OR4C12Q96R67 309 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 P2RX4Q99571 388 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 PITPNC1Q9UKF7 332 aa13.92□□□□□ -0.18
SDC4-201ENST00000372733 KIAA2026Q5HYC2 2103 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 MRPL33O75394 65 aaKnown RBP13.91□□□□□ -0.18
SDC4-201ENST00000372733 IGKV1D-33P01593 117 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 IGKV1-33P01594 117 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 IGLV2-14P01704 120 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 FOLR3P41439 243 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 Q0VFX4 171 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 HLA-BQ31612 363 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 DNLZQ5SXM8 178 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 NCR3LG1Q68D85 454 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 GTF3AQ92664 365 aaKnown RBP13.91□□□□□ -0.18
SDC4-201ENST00000372733 KCNS2Q9ULS6 477 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 COL6A3P12111 3177 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 CD81P60033 236 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 COL10A1Q03692 680 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 SRYQ05066 204 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 LYSMD4Q5XG99 296 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 GPR87Q9BY21 358 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 WDR61Q9GZS3 305 aaKnown RBP13.91□□□□□ -0.18
SDC4-201ENST00000372733 OR51B6Q9H340 312 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 RNF150Q9ULK6 438 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 LAMP3Q9UQV4 416 aa13.91□□□□□ -0.18
SDC4-201ENST00000372733 ZNF737O75373 536 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 OTX2P32243 289 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 HBG1P69891 147 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 HBG2P69892 147 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 CLEC12BQ2HXU8 276 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 TMEM183AQ8IXX5 376 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 LHX4Q969G2 390 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 RPUSD4Q96CM3 377 aaKnown RBP13.9□□□□□ -0.18
SDC4-201ENST00000372733 CTDSP1Q9GZU7 261 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 RIMS4Q9H426 269 aaPredicted RBP13.9□□□□□ -0.18
SDC4-201ENST00000372733 DLL3Q9NYJ7 618 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms