RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZNF497Q6ZNH5 498 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 C5orf24Q7Z6I8 188 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 PRR18Q8N4B5 295 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 OR52M1Q8NGK5 317 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 OR4K15Q8NH41 348 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 ZNF184Q99676 751 aaPredicted RBP12.65□□□□□ -0.38
CLN3-246ENST00000636228 C9orf16Q9BUW7 83 aa12.65□□□□□ -0.38
CLN3-246ENST00000636228 FGF20Q9NP95 211 aaPredicted RBP12.65□□□□□ -0.38
CLN3-246ENST00000636228 C12orf77C9JDV5 145 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 AIPO00170 330 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 ORC5O43913 435 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 WBP4O75554 376 aaKnown RBP12.64□□□□□ -0.39
CLN3-246ENST00000636228 LALBAP00709 142 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 ECI1P42126 302 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 CDX1P47902 265 aaPredicted RBP12.64□□□□□ -0.39
CLN3-246ENST00000636228 MPV17LQ2QL34 196 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 CCDC58Q4VC31 144 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 CT45A1Q5HYN5 189 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 SYT6Q5T7P8 510 aaPredicted RBP12.64□□□□□ -0.39
CLN3-246ENST00000636228 OR5M8Q8NGP6 311 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 OR8U1Q8NH10 309 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 OR1L1Q8NH94 360 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 CT45A3Q8NHU0 189 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 ASCL2Q99929 193 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 CLEC2DQ9UHP7 191 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 TRAPPC2LQ9UL33 140 aa12.64□□□□□ -0.39
CLN3-246ENST00000636228 LSM4Q9Y4Z0 139 aaKnown RBP12.64□□□□□ -0.39
CLN3-246ENST00000636228 TRAV8-7A0A075B6U6 113 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 A0A1W2PPK0 400 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 OGG1O15527 345 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 SLC2A2P11168 524 aaPredicted RBP12.63□□□□□ -0.39
CLN3-246ENST00000636228 GTF2F2P13984 249 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 IGFBP3P17936 291 aaPredicted RBP12.63□□□□□ -0.39
CLN3-246ENST00000636228 IL3RAP26951 378 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 VHLP40337 213 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 CFHR3Q02985 330 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 FOXE3Q13461 319 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 RIPK1Q13546 671 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 NKAPLQ5M9Q1 402 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 SLC25A48Q6ZT89 311 aaKnown RBP12.63□□□□□ -0.39
CLN3-246ENST00000636228 LINC00596Q86U02 117 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 STX19Q8N4C7 294 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 ZFP41Q8N8Y5 198 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 C8orf31Q8N9H6 132 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 ZNF439Q8NDP4 499 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 MUL1Q969V5 352 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 GON7Q9BXV9 100 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 PAK1IP1Q9NWT1 392 aaPredicted RBP12.63□□□□□ -0.39
CLN3-246ENST00000636228 BABAM2Q9NXR7 383 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 ETAA1Q9NY74 926 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 GNG12Q9UBI6 72 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 SCOCQ9UIL1 159 aa12.63□□□□□ -0.39
CLN3-246ENST00000636228 SEC14L6B5MCN3 397 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 MCRIP1C9JLW8 97 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 RAMP3O60896 148 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 HBZP02008 142 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 ELANEP08246 267 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 VDAC1P21796 283 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 MYF6P23409 242 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 SOX6P35712 828 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 ADARB1P78563 741 aaKnown RBP12.62□□□□□ -0.39
CLN3-246ENST00000636228 C9orf66Q5T8R8 295 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 GLIPR1L1Q6UWM5 242 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 TMPRSS11AQ6ZMR5 421 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 FAM71E2Q8N5Q1 922 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 GHSRQ92847 366 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 SMIM19Q96E16 107 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 RITA1Q96K30 269 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 KCTD7Q96MP8 289 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 BANF2Q9H503 90 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 ZMAT5Q9UDW3 170 aaKnown RBP12.62□□□□□ -0.39
CLN3-246ENST00000636228 WSB1Q9Y6I7 421 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 TENM3Q9P273 2699 aa12.62□□□□□ -0.39
CLN3-246ENST00000636228 UBE2QL1A1L167 161 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 ERICH4A6NGS2 130 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 SPINT2O43291 252 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 RRP9O43818 475 aaKnown RBP12.61□□□□□ -0.39
CLN3-246ENST00000636228 ZNF780AO75290 641 aaPredicted RBP12.61□□□□□ -0.39
CLN3-246ENST00000636228 IGHG4P01861 327 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 RCC1P18754 421 aaPredicted RBP12.61□□□□□ -0.39
CLN3-246ENST00000636228 DCKP27707 260 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 DCTN2Q13561 401 aaKnown RBP12.61□□□□□ -0.39
CLN3-246ENST00000636228 ZNF260Q3ZCT1 412 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 RAB12Q6IQ22 244 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 JAGN1Q8N5M9 183 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 RNF152Q8N8N0 203 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 OR5B12Q96R08 314 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 KLK15Q9H2R5 256 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 S100A14Q9HCY8 104 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 MRPS28Q9Y2Q9 187 aaKnown RBP12.61□□□□□ -0.39
CLN3-246ENST00000636228 PEX16Q9Y5Y5 336 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 U3KQK5 164 aa12.61□□□□□ -0.39
CLN3-246ENST00000636228 TRBV5-5A0A0J9YX44 114 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 PNMA8CA0A1B0GUJ8 204 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 NHLRC4P0CG21 123 aaPredicted RBP12.6□□□□□ -0.39
CLN3-246ENST00000636228 CNTFRP26992 372 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 GP2P55259 537 aaKnown RBP12.6□□□□□ -0.39
CLN3-246ENST00000636228 RPS11P62280 158 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLN3-246ENST00000636228 GNMTQ14749 295 aa12.6□□□□□ -0.39
CLN3-246ENST00000636228 DMKNQ6E0U4 476 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms