RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 RTP5Q14D33 572 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 RSPO1Q2MKA7 263 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 FAM74A3Q4VXF1 159 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 FAM74A1Q5RGS3 127 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 BIVMQ86UB2 503 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MBD3L2Q8NHZ7 208 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 KLF14Q8TD94 323 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 P2RX4Q99571 388 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 RNF126Q9BV68 326 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 ACTR3CQ9C0K3 210 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 DYNLRB1Q9NP97 96 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MTCH1Q9NZJ7 389 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 CLCF1Q9UBD9 225 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PINLYPA6NC86 204 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 RAB29O14966 203 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 GDF9O60383 454 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 LYZL6O75951 148 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PSMB3P49720 205 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 ID3Q02535 119 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 RTL8BQ17RB0 113 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 TUSC1Q2TAM9 212 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 KHDC3LQ587J8 217 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 KRBOX4Q5JUW0 171 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PRR18Q8N4B5 295 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 VSTM2AQ8TAG5 236 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MS4A3Q96HJ5 214 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SIRT7Q9NRC8 400 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 TMEM131Q92545 1883 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 A0A1B0GW64 132 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SP6Q3SY56 376 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SCCPDHQ8NBX0 429 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 BPIFCQ8NFQ6 507 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 DMBX1Q8NFW5 382 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 OR10A7Q8NGE5 316 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 OR5C1Q8NGR4 320 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 LINC00052Q96N35 136 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 IGKV1-12A0A0C4DH73 117 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SSSCA1O60232 199 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 IGKV1D-12P01611 117 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MT-ND4LP03901 98 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SUPT4H1P63272 117 aaKnown RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 HTD2P86397 168 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SSX2Q16385 188 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PDLIM3Q53GG5 364 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MBNL2Q5VZF2 373 aaKnown RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 OR4S2Q8NH73 311 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MRPL30Q8TCC3 161 aaKnown RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 TMEM190Q8WZ59 177 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 UHRF2Q96PU4 802 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 HDHD3Q9BSH5 251 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MS4A5Q9H3V2 200 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 OR5AC2Q9NZP5 309 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 NKX2-8O15522 239 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SUB1P53999 127 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PRAMEF5Q5TYX0 476 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 PRAMEF6Q5VXH4 476 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 HPSE2Q8WWQ2 592 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 RPS10P5Q9NQ39 176 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MDC1Q14676 2089 aaKnown RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SPAARA0A1B0GVQ0 90 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 G3V3Q6 166 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 SFTPCP11686 197 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 MUC1P15941 1255 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 LPAR6P43657 344 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 TMEM182Q6ZP80 229 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 GCNT2Q8N0V5 402 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 ZNF561Q8N587 486 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 OR8U1Q8NH10 309 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 ZNF665Q9H7R5 613 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 COQ3Q9NZJ6 369 aa3.89□□□□□ -1.79
SCN1A-210ENST00000635776 ARHGEF17Q96PE2 2063 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-210ENST00000635776 TRAV38-1A0A0B4J264 116 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 ITGB1BP1O14713 200 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 NDUFS6O75380 124 aaKnown RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 ZNF250P15622 560 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 OR3A1P47881 315 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 C2orf68Q2NKX9 166 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 Q3ZCU0 254 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 PARD6GQ9BYG4 376 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 CACNG5Q9UF02 275 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 TM4SF5O14894 197 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 HSPB1P04792 205 aaKnown RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 S100A8P05109 93 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 CELA3AP09093 270 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 NQO2P16083 231 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 CTRB1P17538 263 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 SNCAP37840 140 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 IL15RAQ13261 267 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 CTRB2Q6GPI1 263 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 DHRS7BQ6IAN0 325 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 GGACTQ9BVM4 153 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 OR51B6Q9H340 312 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 SFTA3P0C7M3 94 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 ZNF14P17017 642 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 TESK1Q15569 626 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 BRICD5Q6PL45 260 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 OR4D5Q8NGN0 318 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 HEYLQ9NQ87 328 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-210ENST00000635776 TINAGQ9UJW2 476 aa3.88□□□□□ -1.79
SCN1A-210ENST00000635776 CACNA1DQ01668 2161 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms