RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PLXNB1O43157 2135 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 OR2F2O95006 317 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 ATP6V1G2O95670 118 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 SNRNP70P08621 437 aaKnown RBP12.51□□□□□ -0.41
VPS39-203ENST00000561797 UBBP0CG47 229 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 FAM106CPP0CH98 169 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 VSIG8P0DPA2 414 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 HES1Q14469 280 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 NSUN5P1Q3KNT7 163 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 C9orf152Q5JTZ5 239 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 NKAPLQ5M9Q1 402 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 TMEM91Q6ZNR0 172 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 DRAM1Q8N682 238 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 OR52M1Q8NGK5 317 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 MGLLQ99685 303 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 ISYNA1Q9NPH2 558 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 GFOD1Q9NXC2 390 aa12.51□□□□□ -0.41
VPS39-203ENST00000561797 A0A1W2PPI3 338 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 SPINT2O43291 252 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 PDCD6O75340 191 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 LPLP06858 475 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 CPEP16870 476 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 RCC1P18754 421 aaPredicted RBP12.5□□□□□ -0.41
VPS39-203ENST00000561797 HTR2CP28335 458 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 REG1BP48304 166 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 RAB7AP51149 207 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 LOXL3P58215 753 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 DEFA6Q01524 100 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 MLLT11Q13015 90 aaPredicted RBP12.5□□□□□ -0.41
VPS39-203ENST00000561797 HNF4GQ14541 408 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 C6orf183Q5T699 404 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 OR1L1Q8NH94 360 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 NEDD4LQ96PU5 975 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 OCSTAMPQ9BR26 566 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 TMEM59Q9BXS4 323 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 WNT10AQ9GZT5 417 aa12.5□□□□□ -0.41
VPS39-203ENST00000561797 TRRAPQ9Y4A5 3859 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A9PA6NNJ1 464 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 HSD17B6O14756 317 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 KCNAB3O43448 404 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 WIPF1O43516 503 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 HBZP02008 142 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 GAPDHP04406 335 aaKnown RBP12.49□□□□□ -0.41
VPS39-203ENST00000561797 GLAP06280 429 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 TRAM1Q15629 374 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 C5orf24Q7Z6I8 188 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 CENPVQ7Z7K6 275 aaPredicted RBP12.49□□□□□ -0.41
VPS39-203ENST00000561797 MOB3BQ86TA1 216 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 THNSL2Q86YJ6 484 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 OR8H3Q8N146 312 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 OR10V1Q8NGI7 309 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 KCNG3Q8TAE7 436 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 NICN1Q9BSH3 213 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 PLGRKTQ9HBL7 147 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 GNG12Q9UBI6 72 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 RAB26Q9ULW5 256 aa12.49□□□□□ -0.41
VPS39-203ENST00000561797 AK6Q9Y3D8 172 aaKnown RBP12.49□□□□□ -0.41
VPS39-203ENST00000561797 IGHV3-72A0A0B4J1Y9 119 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 CCRL2O00421 344 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 SLC22A1O15245 554 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 SLC31A2O15432 143 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 CA11O75493 328 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 IGKV1D-33P01593 117 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 IGKV1-33P01594 117 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 AMY1AP04745 511 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 AMY2AP04746 511 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 TMEM11P17152 192 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 CHATP28329 748 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 RPS27AP62979 156 aaKnown RBP12.48□□□□□ -0.41
VPS39-203ENST00000561797 FABP5Q01469 135 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 UNC119Q13432 240 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 P2RY14Q15391 338 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 TRAT1Q6PIZ9 186 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 C6orf201Q7Z4U5 140 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 GAPTQ8N292 157 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 LINC00311Q8N616 119 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 OR5AU1Q8NGC0 362 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 OR6M1Q8NGM8 313 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 MRPL30Q8TCC3 161 aaKnown RBP12.48□□□□□ -0.41
VPS39-203ENST00000561797 WIPF2Q8TF74 440 aaPredicted RBP12.48□□□□□ -0.41
VPS39-203ENST00000561797 GFI1Q99684 422 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 CITED2Q99967 270 aaPredicted RBP12.48□□□□□ -0.41
VPS39-203ENST00000561797 SULT4A1Q9BR01 284 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 FAAP24Q9BTP7 215 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 TAF9BQ9HBM6 251 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 RAB9BQ9NP90 201 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 KCNIP1Q9NZI2 227 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 BLOC1S6Q9UL45 172 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 MOB4Q9Y3A3 225 aa12.48□□□□□ -0.41
VPS39-203ENST00000561797 VWFP04275 2813 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 IGHV1-3A0A0C4DH29 117 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 ARL6IP5O75915 188 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 BPNT1O95861 308 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 CD37P11049 281 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 PSMA1P25786 263 aaKnown RBP12.47□□□□□ -0.41
VPS39-203ENST00000561797 IL3RAP26951 378 aa12.47□□□□□ -0.41
VPS39-203ENST00000561797 CALRP27797 417 aaKnown RBP12.47□□□□□ -0.41
VPS39-203ENST00000561797 BLVRBP30043 206 aaPredicted RBP12.47□□□□□ -0.41
VPS39-203ENST00000561797 ZNF816Q0VGE8 651 aaPredicted RBP12.47□□□□□ -0.41
VPS39-203ENST00000561797 TBCEQ15813 527 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms