RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MLXQ9UH92 298 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 METRNQ9UJH8 293 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 MED13LQ71F56 2210 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 AKAP6Q13023 2319 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 HMGB3O15347 200 aaKnown RBP14.35□□□□□ -0.11
USP28-208ENST00000540438 PGLYRP1O75594 196 aaPredicted RBP14.35□□□□□ -0.11
USP28-208ENST00000540438 CCDC71LQ8N9Z2 235 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 OR10V1Q8NGI7 309 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 OR2G3Q8NGZ4 309 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 DUSP13Q9UII6 198 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 CHD8Q9HCK8 2581 aa14.35□□□□□ -0.11
USP28-208ENST00000540438 RAB19A4D1S5 217 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 PSPNO60542 156 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 SULT1A2P50226 295 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 OR5A2Q8NGI9 324 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 SMIM8Q96KF7 97 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 CLCC1Q96S66 551 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 LINC00470Q9BZP3 86 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 OPN3Q9H1Y3 402 aaPredicted RBP14.34□□□□□ -0.11
USP28-208ENST00000540438 COL6A6A6NMZ7 2263 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 CA11O75493 328 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 KCNJ3P48549 501 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 TNFSF10P50591 281 aa14.34□□□□□ -0.11
USP28-208ENST00000540438 MRPS18CQ9Y3D5 142 aaKnown RBP14.34□□□□□ -0.11
USP28-208ENST00000540438 SERPINE2P07093 398 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 ATP6V0CP27449 155 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 EDDM3AQ14507 147 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 RNPS1Q15287 305 aaKnown RBP14.33□□□□□ -0.11
USP28-208ENST00000540438 BTNL8Q6UX41 500 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 C9orf106Q8NAJ2 232 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 IL36GQ9NZH8 169 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 ZNF391Q9UJN7 358 aa14.33□□□□□ -0.11
USP28-208ENST00000540438 PUS1Q9Y606 427 aaKnown RBP eCLIP14.33□□□□□ -0.11
USP28-208ENST00000540438 FTH1P19P0C7X4 201 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 ZNF883P0CG24 379 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 CEACAM6P40199 344 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 OR10Z1Q8NGY1 313 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 OR1L1Q8NH94 360 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 ATP23Q9Y6H3 246 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 CHD3Q12873 2000 aaKnown RBP14.33□□□□□ -0.12
USP28-208ENST00000540438 SLC25A24Q6NUK1 477 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 OR4D5Q8NGN0 318 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 BOD1Q96IK1 185 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 OR51I2Q9H344 312 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 SH3BGRL2Q9UJC5 107 aa14.33□□□□□ -0.12
USP28-208ENST00000540438 GPR137BO60478 399 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 METTL15P1P0C7V9 234 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 ZNF816Q0VGE8 651 aaPredicted RBP14.32□□□□□ -0.12
USP28-208ENST00000540438 TBC1D28Q2M2D7 210 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 KRBOX4Q5JUW0 171 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 FAM201AQ5SY85 155 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 ZNF573Q86YE8 665 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 TMEM252Q8N6L7 170 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 OR52L2PQ8NGH6 319 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 RXFP4Q8TDU9 374 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 GPR146Q96CH1 333 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 C14orf79Q96F83 325 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 AIFM2Q9BRQ8 373 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 CACNG5Q9UF02 275 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 ABCA1O95477 2261 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 DCHS2Q6V1P9 2916 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 SMPD2O60906 423 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 DEFA4P12838 97 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 GUK1Q16774 197 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 ODF3L1Q8IXM7 274 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 CMTM1Q8IZ96 169 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 MRGPRDQ8TDS7 321 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 RSG1Q9BU20 258 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 C19orf12Q9NSK7 152 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 NCOR2Q9Y618 2525 aa14.32□□□□□ -0.12
USP28-208ENST00000540438 BORCS7-ASMTA0A0B4J1R7 106 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 H7C2Y5 167 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 KRASP01116 189 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 COL8A2P25067 703 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 OR3A1P47881 315 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 FGF8P55075 233 aaPredicted RBP14.31□□□□□ -0.12
USP28-208ENST00000540438 FAM212BQ9NTI7 297 aaPredicted RBP14.31□□□□□ -0.12
USP28-208ENST00000540438 PURGQ9UJV8 347 aaKnown RBP14.31□□□□□ -0.12
USP28-208ENST00000540438 CRYBA1P05813 215 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 ECI1P42126 302 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 OR8G1Q15617 311 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 SPRNQ5BIV9 151 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 EIF5AL1Q6IS14 154 aaKnown RBP14.31□□□□□ -0.12
USP28-208ENST00000540438 Q6ZR03 302 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 SPAG16Q8N0X2 631 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 CCDC54Q8NEL0 328 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 KLF14Q8TD94 323 aaPredicted RBP14.31□□□□□ -0.12
USP28-208ENST00000540438 TAAR3PQ9P1P4 343 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 GLS2Q9UI32 602 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 RAMP3O60896 148 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 PMELP40967 661 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 ZNF528Q3MIS6 628 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 LRP11Q86VZ4 500 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 PLEKHA2Q9HB19 425 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 POMT1Q9Y6A1 747 aa14.31□□□□□ -0.12
USP28-208ENST00000540438 IGHV3OR15-7A0A075B7D8 119 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 ZNF806P0C7X5 589 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 SPP1P10451 314 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 GABRA2P47869 451 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 SHEQ5VZ18 495 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms